Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53630 192 / 1e-61 unknown protein AT4G18692 38 / 0.0007 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023752 [exp] 379 / 2e-134 AT3G53630 207 / 1e-67 unknown protein Lus10024421 [exp] 218 / 1e-70 AT3G53630 200 / 3e-64 unknown protein Lus10025312 [exp] 75 / 3e-17 AT3G53630 66 / 1e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G082400 [exp] 219 / 1e-71 AT3G53630 197 / 8e-64 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003983 pacid=23157468 polypeptide=Lus10003983 locus=Lus10003983.g ID=Lus10003983.BGIv1.0 annot-version=v1.0 ATGAGCTCATTCAACAACCACACCACCACCCCTAACTTCGACAACCTCCTCCTCCGTACCCTAATGGGCCGTCTCCAAGTCCGTCCTCCCCCCACCACCT CCTCCCAACCCTCTAAATCCCTCGAGGACCTCCTCTTCGACGCCGTCAACGACCTACCCGCAGACTCCGATGACGAGGACGACAACGATGACCTCGACCT CAACGCCGACAAGACCCAGCTACGCAAGGAAGAGGCCAGGCTCGAGAAGGAGATCATCCGGGTGATTCTTTCCGGGAATACCGATTCCCTGAAGCCTAAC TCGGGTCAGGCGGTTACTATCCGCGAGCACCATATATGCGTCGGCTTTCACCAGGAGAAGGACTCCGATTATAGGGTGTGGGAGTGGCACGGTCACATCA TGTTGTTCGATGATGAGAACGGCTACAACCCTGAGTACATCTACGGCAATTACTTCGAGAGGTTGCTTGGCGGCGCTGCGGTCAGTCGGTCGAAGAAGGA AGAAGAGAAGGAGGAGGAGGAAGACGAAGAAGAAGAAGAAGAAGCAGAAGAGGAGGAGGAGGAGACGACTGCCAATTTGGGGTTGAGGGAGTTGATCGAT GATGGCGAATCCAATGGTGCTCGGATACTGCACAGGAATATTGGAGCTAGCGCCAAGGTATTGAACTGGAACATTGGAATTGCACATTTTCTCAATTATT TTTGCTTCTTTCGAACTGCTTTTGCTGAAGCTAGCTCTGTCATATTAGCTATTATCAAACGGAGGGATGATCAAACTGGTTAG
AA sequence Show only first row Show all	>Lus10003983 pacid=23157468 polypeptide=Lus10003983 locus=Lus10003983.g ID=Lus10003983.BGIv1.0 annot-version=v1.0 MSSFNNHTTTPNFDNLLLRTLMGRLQVRPPPTTSSQPSKSLEDLLFDAVNDLPADSDDEDDNDDLDLNADKTQLRKEEARLEKEIIRVILSGNTDSLKPN SGQAVTIREHHICVGFHQEKDSDYRVWEWHGHIMLFDDENGYNPEYIYGNYFERLLGGAAVSRSKKEEEKEEEEDEEEEEEAEEEEEETTANLGLRELID DGESNGARILHRNIGASAKVLNWNIGIAHFLNYFCFFRTAFAEASSVILAIIKRRDDQTG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53630			unknown protein		Lus10003983 [exp]	0	1
AT3G53630			unknown protein		Lus10023752 [exp]	1.0	0.9536
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Lus10035459 [exp]	4.0	0.9283
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014431 [exp]	4.9	0.9463
AT5G43790			Pentatricopeptide repeat (PPR)...		Lus10039388 [exp]	6.9	0.9199
AT5G64670			Ribosomal protein L18e/L15 sup...		Lus10023078 [exp]	9.4	0.9344
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10006916 [exp]	10.8	0.9199
AT5G35530			Ribosomal protein S3 family pr...		Lus10030502 [exp]	12.0	0.9399
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Lus10018639 [exp]	14.3	0.9328
AT5G13780			Acyl-CoA N-acyltransferases (N...		Lus10016378 [exp]	14.5	0.9303
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Lus10022844 [exp]	16.7	0.9049

Compare expression of checked genes

Lus10003983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.