Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09550 703 / 0 Ankyrin repeat family protein (.1) AT3G12360 649 / 0 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT1G07710 303 / 2e-95 Ankyrin repeat family protein (.1) AT2G01680 289 / 2e-90 Ankyrin repeat family protein (.1) AT2G31820 276 / 4e-84 Ankyrin repeat family protein (.1) AT5G60070 273 / 5e-84 ankyrin repeat family protein (.1) AT1G05640 270 / 4e-82 Ankyrin repeat family protein (.1) AT5G02620 263 / 1e-80 ATANK1, ANK1 ankyrin-like1 (.1) AT5G54710 89 / 2e-18 Ankyrin repeat family protein (.1) AT1G34050 89 / 3e-18 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015037 [exp] 964 / 0 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 672 / 0 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10023460 [exp] 640 / 0 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10040335 [exp] 583 / 0 AT3G12360 868 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10015224 [exp] 298 / 1e-93 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 298 / 2e-93 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10021814 [exp] 294 / 4e-92 AT2G01680 771 / 0.0 Ankyrin repeat family protein (.1) Lus10034579 [exp] 291 / 9e-91 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 275 / 4e-84 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G214500 [exp] 712 / 0 AT3G12360 742 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 674 / 0 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 663 / 0 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 313 / 1e-99 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 311 / 1e-98 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 309 / 5e-98 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 302 / 3e-95 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 301 / 6e-95 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.008G134500 [exp] 296 / 7e-93 AT2G01680 750 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069400 [exp] 284 / 2e-88 AT1G07710 676 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10003986 pacid=23157484 polypeptide=Lus10003986 locus=Lus10003986.g ID=Lus10003986.BGIv1.0 annot-version=v1.0 ATGAGAATGGACGAAGGAAACGAGAGGGACCTGGAGAAGGGATTGTTCTTCAGATCTATCCGTTCGAGTCCGACCCTGTTCTCCGACGCCTCGTCGTTTT CTTCGCCAGGGCCGCCGTCGCCGTCGCCGTCGTCGACGCCGAGAGGGACTCTAGTCCTGTCCAACTCAGGCAAGGCTCTGCTCGTCTCCAATTCCAACAA ATCCCTAGGCATTTCGAATTCCGGGAAGCGATACGACAGGAAGAAGTACGTGAAGCAGGTAACGGGTCGCCACAATGACACTGAGCTTCACTTGGCCGCC CAACGAGGCGACCTGCCCTCCGTCCGCCACATGCTCGACGAGATCAGTGCGCAGATGATGGGGACTCTAGGGGGTGCCGATTTCGACGCCGAGGTTGCGG AGATAAGGTCAGCAGTTGTGAACGAGGTGAATGAGCTAGGAGAAACGGCTCTGTTCATTGCAGCAGAAAAGGGCCACCTTCACATTGTGAGGGAGTTACT GCAGTTCACTTCTAAAGCATCTATTGCCTTGAAGAACAAGGCTGGCTTTGATGCTCTTCACATTGCTGCAAGTCAAGGCCATCAAGAAATTGTACAGGTT CTGCTAGAGGTGGACCCAACGCTGAGCAAAACAGTGGGGCAATCGAACGCAAGTCCGTTGGTATCAGCGGCGGCCAAGGGGCATACAGGAGTGGTTAAAG AGTTACTAGAGAAAGATCCAAGCTTGCTAGACATGGCTAAATCCAACGGCAAAAATGCATTGCATCTTGCTGCCAGACAGGGTTATGTAGACATTGTGAG GGCACTGCTTGAAAGAAATCCACAGATAGCTCGCAGGACTGACAAGAAGGGCCAAACTGCATTACACATGGCTGTTAAAGGAGTCAGCTCCGAGGTTGTC AGATTGCTTCTTTGTGCCGATGCAGCCATTGTCATGCTCCCTGACCGCCATGGTAACACCGCTTTGCATGTTGCCACCAGGAAGAAGCGAGTTGAGATAG TACATGAACTGTTGTATCTACCAGACACCAACGTGAATGCACTAACAAGAGACCATAAAACAGCAGTAGACATAGCCGAGGGGCTTCCTTTATCGGAAGA AATCTCGGAGATAAAAGAATCCTTATACCGTCACGGCGCTCTCAAAGCCAACGACCTCAACCAACCACGGGACGAGCTCCGCCGCACAGTCACCGAAATC AAGAAAGAAGTCCACATCCAGCTCGAACAAACCCGCAAGACCAACAAGAACGTCGACGGCATCGCCAAGGAACTCCGCCGCCTCCACCGTGAAGGGATCA ACAACGCCACGAACTCGGTCACCGTCGTGGCCGTCCTCTTCGCCACCGTGGCCTTCGCCGCCATGTTCACCGTTCCCGGAGGCGACAACAGCTACGGGAG GGCGGTGGTGGTGAGCTCGCCGTCGTTCAAGGTGTTCTTCATATTCAACGCGGTGGCGCTGTTCACGTCGCTGGCAGTGGTGGTGGTGCAGATCACGATC GTGAGGGGGGAGACGAAGTCGGCACGGCGGGTGGTGGAGGTGTTTTGGTTGGCGTCGGTATGCACGACGGTGGCGTTCATATCGTCGGCGTGCATCGTGG TGGGGCGGCGGAATCGGTGGGCGGCGATCCTGATAACAGTGATCGGTGGGGTGACGATGGCGGGGGTATTGGGGACGATGACGTTTTATGTAATGAAGTC AAGGAGGATTCGGCGGAAGAAGAGGAGGGAGAAGAGTAGGATCCTTCAGAATGGAGCTCCGTCTTCGTTTAGGATTTCGGATTCTGAGACGGAAGTCAAT CCCATTTATGCCCTTTGA
AA sequence Show only first row Show all	>Lus10003986 pacid=23157484 polypeptide=Lus10003986 locus=Lus10003986.g ID=Lus10003986.BGIv1.0 annot-version=v1.0 MRMDEGNERDLEKGLFFRSIRSSPTLFSDASSFSSPGPPSPSPSSTPRGTLVLSNSGKALLVSNSNKSLGISNSGKRYDRKKYVKQVTGRHNDTELHLAA QRGDLPSVRHMLDEISAQMMGTLGGADFDAEVAEIRSAVVNEVNELGETALFIAAEKGHLHIVRELLQFTSKASIALKNKAGFDALHIAASQGHQEIVQV LLEVDPTLSKTVGQSNASPLVSAAAKGHTGVVKELLEKDPSLLDMAKSNGKNALHLAARQGYVDIVRALLERNPQIARRTDKKGQTALHMAVKGVSSEVV RLLLCADAAIVMLPDRHGNTALHVATRKKRVEIVHELLYLPDTNVNALTRDHKTAVDIAEGLPLSEEISEIKESLYRHGALKANDLNQPRDELRRTVTEI KKEVHIQLEQTRKTNKNVDGIAKELRRLHREGINNATNSVTVVAVLFATVAFAAMFTVPGGDNSYGRAVVVSSPSFKVFFIFNAVALFTSLAVVVVQITI VRGETKSARRVVEVFWLASVCTTVAFISSACIVVGRRNRWAAILITVIGGVTMAGVLGTMTFYVMKSRRIRRKKRREKSRILQNGAPSSFRISDSETEVN PIYAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09550			Ankyrin repeat family protein ...		Lus10003986 [exp]	0	1
					Lus10041470 [exp]	1.0	0.7747
AT3G09660		MCM8	minichromosome maintenance 8 (...		Lus10015060 [exp]	10.6	0.7338
AT5G10770			Eukaryotic aspartyl protease f...		Lus10026243 [exp]	21.7	0.7072
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Lus10042017 [exp]	31.7	0.6434
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Lus10039173 [exp]	40.2	0.6355
					Lus10034684 [exp]	50.5	0.6243
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10038514 [exp]	51.9	0.6486
AT2G18460		LCV3	like COV 3 (.1)		Lus10014314 [exp]	53.5	0.5486
AT3G01270			Pectate lyase family protein (...		Lus10037207 [exp]	63.0	0.6410
AT3G27470			Protein of unknown function (D...		Lus10022287 [exp]	65.7	0.6289

Compare expression of checked genes

Lus10003986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.