Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53500 246 / 9e-81 RSZ32, RS2Z32, At-RS2Z arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT2G37340 245 / 1e-80 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) AT4G02430 69 / 5e-14 SR34b, At-SR34b Serine/Arginine-Rich Protein Splicing Factor 34b, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G09140 67 / 7e-13 ATSRP30.1, ATSRP30.2, SR30, At-SR30 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) AT1G02840 67 / 9e-13 ATSRP34, SR1, SR34, At-SR34 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT1G60650 65 / 6e-12 AtRZ-1b AtRZ-1b, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT1G53720 65 / 2e-11 ATCYP59, CYP59 cyclophilin 59 (.1) AT3G61860 63 / 3e-11 ATRSP31, At-RS31 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G46610 60 / 3e-10 RS31a, At-RS31a arginine/serine-rich splicing factor 31a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G49430 60 / 4e-10 SRP34A, SR34a, At-SR34a Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015039 [exp] 427 / 4e-152 AT3G53500 256 / 8e-85 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Lus10025280 [exp] 237 / 1e-77 AT3G53500 184 / 2e-57 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Lus10020656 [exp] 68 / 1e-12 AT1G02840 297 / 2e-100 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10029885 [exp] 68 / 1e-12 AT1G02840 253 / 2e-81 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10007869 [exp] 62 / 4e-11 AT1G02840 308 / 1e-105 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10008218 [exp] 62 / 8e-11 AT1G02840 228 / 3e-73 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10003606 [exp] 61 / 1e-10 AT1G02840 299 / 5e-102 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10026925 [exp] 59 / 3e-10 AT4G31580 184 / 2e-59 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2) Lus10030226 [exp] 60 / 4e-10 AT3G61860 320 / 8e-111 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G215200 [exp] 322 / 2e-110 AT2G37340 266 / 6e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.016G081700 [exp] 313 / 3e-107 AT2G37340 268 / 2e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.005G097500 [exp] 66 / 9e-12 AT1G53720 667 / 0.0 cyclophilin 59 (.1) Potri.013G015500 [exp] 64 / 2e-11 AT1G09140 263 / 7e-88 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) Potri.005G024600 [exp] 62 / 6e-11 AT1G09140 258 / 6e-86 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) Potri.014G129900 [exp] 62 / 9e-11 AT1G02840 272 / 5e-91 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.002G205025 [exp] 61 / 1e-10 AT1G02840 272 / 1e-90 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.002G175000 [exp] 61 / 1e-10 AT3G61860 291 / 8e-100 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G021800 [exp] 61 / 2e-10 AT3G49430 317 / 2e-108 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Potri.015G004600 [exp] 60 / 3e-10 AT3G49430 303 / 1e-103 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10003987 pacid=23157480 polypeptide=Lus10003987 locus=Lus10003987.g ID=Lus10003987.BGIv1.0 annot-version=v1.0 ATGCCTCGTCATGATGACAGATACGCTAGCACCCGCCTCTATGTTGGCCACCTGGGCTCCCGCACAAGGTCTAGAGATCTTGAATACGTATTCAGCAAAT ACGGAAGAGTTCGAGACGTGGATATGAAGCGTGACTATGCATTTGTTGAATTTAGTGATCCACGAGATGCTGATGATGCAAGGTATCACTTAGATGGTAG AGAGGTCGACGGGAGCCGCCTCATTGTGGAATTTGCCAAAGGGGTACCTCGTAGCTCTCGAGAACCCATGGGCAGAGGAGCTCCTCCTCCCGGGTCTGGC CGCTGCTTCAATTGTGGTATTGATGGTCACTGGGCTCGTGATTGCAAAGCTGGTGACTGGAAGAATAAGTGTTACAGATGTGGCGAAAGGGGTCACATAG AAAGAAACTGCAAGAACAGTCCCCAGAAACTGACTCGTGGGCGGAGTTATTCAAGGTCTCCTTCTCCTCGTCGCGGTGGTGGCAGGAGCCGTAGTCCAAG TTACAGTCGAGGCCGCAGCTATAGCCGATCAAGGTCTCCCGCACCTAAAAGGGAGCGAAGTGTTGAACATGAGGCAAGGTCACTGAGCCCGGAAGTGCCT TCCAAGGGCAGGAAGCGCAGCCCTACTCCTGAAGATGGGAGCCCACTCCCTTCTCCCAAAACTAGGAAAGTAGACGACAATCGAGATAGTCCTAGTCCAA GGGGAAGGAGCCCCAGCCGAAGTCGGAGTCCTGTAAGAGAGAGCCCCCGAAATGGGCGGTACGAGAGTCCTAAGGCTAATGGACGTACTCCCAGCCGCAG TCCTAGTCCCAGGGCCAGGGATGATATGGAGAGGAGCCCTGCTGCGGATGATTATGAGGATGATCGTCGAGGCAGTGCATCCCCTTGA
AA sequence Show only first row Show all	>Lus10003987 pacid=23157480 polypeptide=Lus10003987 locus=Lus10003987.g ID=Lus10003987.BGIv1.0 annot-version=v1.0 MPRHDDRYASTRLYVGHLGSRTRSRDLEYVFSKYGRVRDVDMKRDYAFVEFSDPRDADDARYHLDGREVDGSRLIVEFAKGVPRSSREPMGRGAPPPGSG RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCKNSPQKLTRGRSYSRSPSPRRGGGRSRSPSYSRGRSYSRSRSPAPKRERSVEHEARSLSPEVP SKGRKRSPTPEDGSPLPSPKTRKVDDNRDSPSPRGRSPSRSRSPVRESPRNGRYESPKANGRTPSRSPSPRARDDMERSPAADDYEDDRRGSASP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10003987 [exp]	0	1
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10015039 [exp]	1.4	0.9170
AT2G25970			KH domain-containing protein (...		Lus10013531 [exp]	5.3	0.9037
AT3G20240			Mitochondrial substrate carrie...		Lus10033351 [exp]	10.4	0.8558
AT2G25970			KH domain-containing protein (...		Lus10023854 [exp]	12.8	0.8926
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10014971 [exp]	14.9	0.8817
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	17.0	0.8973
AT5G14610			DEAD box RNA helicase family p...		Lus10014553 [exp]	20.8	0.8731
AT1G29370			Kinase-related protein of unkn...		Lus10004604 [exp]	22.3	0.8670
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10038853 [exp]	29.2	0.8769
AT2G17580			Polynucleotide adenylyltransfe...		Lus10016699 [exp]	29.5	0.8729

Compare expression of checked genes

Lus10003987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.