Plant FIBer expression Database

Lus10003988 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G02710 175 / 3e-56 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015040
[exp]
332 / 2e-118 AT5G02710 178 / 2e-57 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G215300
[exp]
214 / 9e-72 AT5G02710 208 / 1e-69 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03692 CxxCxxCC Putative zinc- or iron-chelating domain
Representative CDS sequence
>Lus10003988 pacid=23157489 polypeptide=Lus10003988 locus=Lus10003988.g ID=Lus10003988.BGIv1.0 annot-version=v1.0
ATGTCTCACGCCTTAGCTTTGTCATGTGTTGGTAGCGTCATCTCGGCGACTGCCCACCGGCAACTCAACTTTGGTAAAAGCGGTACAATAAGAATGCAGA
GTCAACAACCGTCTAATCAGAACAAAATCAAGAGAGGAAAAAACGCTAACAAAGTGTTTCCCAGTCAGAGGAAGGACTCACCGTGGAAATGCGTGGAGGG
CTGCGGTGCTTGCTGCAAGTTGGATAAGGGCCCACTTTTCCCCACTCCTGAAGAAATCTTCACTGATTCTTCTGATGTCGAGCTGTATAGAAGCTTGATA
GGTCCGGATGGATGGTGCATTCACTACGAGAAAAGCACCCGAAAGTGCTCTATCTACGCTGATCGGCCGTACTTTTGTCGAGTGGATGAAAATGTGTTCG
AGGACTTGTATGGAATCAACAAGAAGATGTTCAATAGAGAGGCTTGCAACTCGTGTAGAGACACCATCTCGATGATCTACGGGTTTGGTTCAAAAGAATT
AAACAACTTCAACCAGTCTCTGGAGAAGTGA
AA sequence
>Lus10003988 pacid=23157489 polypeptide=Lus10003988 locus=Lus10003988.g ID=Lus10003988.BGIv1.0 annot-version=v1.0
MSHALALSCVGSVISATAHRQLNFGKSGTIRMQSQQPSNQNKIKRGKNANKVFPSQRKDSPWKCVEGCGACCKLDKGPLFPTPEEIFTDSSDVELYRSLI
GPDGWCIHYEKSTRKCSIYADRPYFCRVDENVFEDLYGINKKMFNREACNSCRDTISMIYGFGSKELNNFNQSLEK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G02710 unknown protein Lus10003988
[exp]
0 1
AT5G02710 unknown protein Lus10015040
[exp]
4.0 0.8565
AT5G40160 EMB139, EMB506 embryo defective 506, EMBRYO D... Lus10032165
[exp]
5.2 0.8977
AT3G13180 NOL1/NOP2/sun family protein /... Lus10022523
[exp]
5.5 0.8528
AT2G40760 Rhodanese/Cell cycle control p... Lus10029020
[exp]
5.5 0.8201
AT1G29510 SAUR68 SMALL AUXIN UPREGULATED 68, SA... Lus10020439
[exp]
7.1 0.8777
AT4G37170 Pentatricopeptide repeat (PPR)... Lus10007772
[exp]
9.7 0.8428
AT4G31650 B3 REM6 Transcriptional factor B3 fami... Lus10026265
[exp]
9.8 0.8178
AT5G26880 AGL26 AGAMOUS-like 26 (.1.2) Lus10015701
[exp]
10.7 0.8715
AT5G16140 Peptidyl-tRNA hydrolase family... Lus10031901
[exp]
13.0 0.8805
AT2G32180 PTAC18 plastid transcriptionally acti... Lus10035307
[exp]
13.2 0.8686

Lus10003988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.