Plant FIBer expression Database

Lus10003989 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G53490 184 / 3e-58 unknown protein
AT5G02720 72 / 7e-16 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015041
[exp]
205 / 9e-68 AT3G53490 116 / 2e-33 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G081900
[exp]
217 / 2e-71 AT3G53490 196 / 4e-63 unknown protein
PFAM info
Representative CDS sequence
>Lus10003989 pacid=23157457 polypeptide=Lus10003989 locus=Lus10003989.g ID=Lus10003989.BGIv1.0 annot-version=v1.0
ATGTTGATTCGGTCGAATAAGTTCAGGCTTTCGACCCTGTTCCTTATCTCTTTGATTTTCTTCTTCACCTGCTTCCCGGGTTTGACGATATCCGCCGTGG
TAAGCTTGGGTTCGATACAGATTTACAACACGCACGAATGGTTCAAGAGTTCCAAACCGACGGTGTACTTTCATTGTATAGGAGAGAACAACAAGACTAT
TTTGCCTGATGTCAAGGAAGTCAACGTAACCTACAGCTTTAATGGCGATGAATCTTGGCAGCCCCTAACAGAGTTCATGACCAAGAAATGCAAGCGTTGT
GGATTCTACGAGGAGGATACCTTCAAATCAGATGATGTGTATGAGGAGTGGGAATTTTGTCCTTCTGATTTTTTGGATTCTGATGGCACCTATAAGCGGG
GCAAGAAGGATGCATACGATGCTACCTTTCTTTGCAAACAGTGTGTTACTCTTCCAGATTTGAGCAGCAACTCTAACTCACCACGCAAGAGGAAAGGAAT
GCACATCGTCGTGATTATACTAATCAGCACTCTAGTTTCGACCGTGTTGATCCTGGGGTCAATTCTATCGTACAAGTACTGGCTCAAGAAGCGGAGAGAG
CAAGAACAAGCTAGGTTTCTGAAGCTTTTCGAAGATGGCGATGACATCGAAGATGATTTGGATATGGATACAACAATTTAG
AA sequence
>Lus10003989 pacid=23157457 polypeptide=Lus10003989 locus=Lus10003989.g ID=Lus10003989.BGIv1.0 annot-version=v1.0
MLIRSNKFRLSTLFLISLIFFFTCFPGLTISAVVSLGSIQIYNTHEWFKSSKPTVYFHCIGENNKTILPDVKEVNVTYSFNGDESWQPLTEFMTKKCKRC
GFYEEDTFKSDDVYEEWEFCPSDFLDSDGTYKRGKKDAYDATFLCKQCVTLPDLSSNSNSPRKRKGMHIVVIILISTLVSTVLILGSILSYKYWLKKRRE
QEQARFLKLFEDGDDIEDDLDMDTTI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G53490 unknown protein Lus10003989
[exp]
0 1
AT5G45130 ATRAB-F2A, RHA1... ARABIDOPSIS RAB HOMOLOG F2A, R... Lus10040625
[exp]
1.0 0.9408
AT2G35680 Phosphotyrosine protein phosph... Lus10040174
[exp]
2.4 0.9352
AT4G08230 glycine-rich protein (.1.2) Lus10041619
[exp]
3.0 0.9209
AT4G13630 Protein of unknown function, D... Lus10022791
[exp]
3.5 0.9092
AT4G29960 unknown protein Lus10001629
[exp]
5.5 0.9093
AT4G21865 unknown protein Lus10014471
[exp]
5.5 0.9040
AT5G56340 ATCRT1 RING/U-box superfamily protein... Lus10013397
[exp]
8.1 0.9047
AT3G63220 Galactose oxidase/kelch repeat... Lus10022061
[exp]
9.0 0.9073
AT4G27880 Protein with RING/U-box and TR... Lus10018110
[exp]
9.5 0.9084
AT4G11660 HSF AT-HSFB2B, HSFB... HEAT SHOCK TRANSCRIPTION FACTO... Lus10024508
[exp]
9.8 0.8900

Lus10003989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.