Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02740 181 / 2e-57 Ribosomal protein S24e family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015045 [exp] 380 / 7e-136 AT5G02740 178 / 4e-56 Ribosomal protein S24e family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G215800 [exp] 157 / 2e-47 AT5G02740 139 / 2e-40 Ribosomal protein S24e family protein (.1.2) Potri.012G089800 [exp] 45 / 1e-06 AT5G02740 43 / 4e-06 Ribosomal protein S24e family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10003991 pacid=23157464 polypeptide=Lus10003991 locus=Lus10003991.g ID=Lus10003991.BGIv1.0 annot-version=v1.0 ATGAGTCTCCTGAGAAGCGGAATCCGAGCGACTTTCGTTCTTCGAACATCAACTTCGAGACTTGGATCCCTCTGGTTCCTCCGAGATTCCTCCAACCATT TCTCCACCGAAGCACGACACCCTCCTTCATCGCCGCAAGCCTCATCCGTCGATCCGTTCCGTCAAACACCAGGAGTTGCTTATGGGAGATTGTTCGGTGG TGGGAAGCATACATTGAAGACGGACATTATCAATCTGCTGCAGGGTTGTGATTTGGGTATTGAGGATATCAAGTTCAGTTACACCCGTGGATTTACTCCT TTTGCAGTGCTGTTACAATTTCCTTCCCGTCAGGCCTACGACAAAGCTCATAAGGTCCTTGGAAGGAAGGGCCGTGTTCACTGGTTGCAAAGGGGTGAAC GTGCCGAGTGGGATCGTCAAACACCACACAACGGGAAAACGGTTCTGGTGCAAGGAGTTCCAGACAATGCAACTCCAGAAGATATCGAACGCTTTTTGTC TGGCTGTGATTTTGATCCGGTCTCTATCCAGTTCATAAGACAGGAGATTCCACCAAACTCTATAAGAAGCGCTGTTGTGAGATTTGATTCTCCGGTGCAG GCAATGAATGCATTCATCTCTAAGAATGGAGGATTTTGTCTAAACCGTAGGGTTTGGATGCGAGTCGTCCAGTAA
AA sequence Show only first row Show all	>Lus10003991 pacid=23157464 polypeptide=Lus10003991 locus=Lus10003991.g ID=Lus10003991.BGIv1.0 annot-version=v1.0 MSLLRSGIRATFVLRTSTSRLGSLWFLRDSSNHFSTEARHPPSSPQASSVDPFRQTPGVAYGRLFGGGKHTLKTDIINLLQGCDLGIEDIKFSYTRGFTP FAVLLQFPSRQAYDKAHKVLGRKGRVHWLQRGERAEWDRQTPHNGKTVLVQGVPDNATPEDIERFLSGCDFDPVSIQFIRQEIPPNSIRSAVVRFDSPVQ AMNAFISKNGGFCLNRRVWMRVVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02740			Ribosomal protein S24e family ...		Lus10003991 [exp]	0	1
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10001681 [exp]	1.4	0.9715
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007267 [exp]	3.9	0.9462
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023454 [exp]	4.9	0.9639
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10030113 [exp]	6.2	0.9586
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10005680 [exp]	6.2	0.9395
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10004942 [exp]	6.7	0.9435
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Lus10036566 [exp]	8.8	0.9441
AT1G67430			Ribosomal protein L22p/L17e fa...		Lus10006421 [exp]	9.2	0.9579
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10035584 [exp]	10.1	0.9457
AT4G29410			Ribosomal L28e protein family ...		Lus10012914 [exp]	12.7	0.9376

Compare expression of checked genes

Lus10003991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.