Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02750 82 / 7e-18 SGR9 SHOOT GRAVITROPISM 9, RING/U-box superfamily protein (.1) AT5G64920 60 / 3e-10 CIP8 COP1-interacting protein 8 (.1) AT5G08139 59 / 1e-09 RING/U-box superfamily protein (.1) AT5G15820 57 / 4e-09 RING/U-box superfamily protein (.1) AT3G02340 57 / 6e-09 RING/U-box superfamily protein (.1) AT3G19950 56 / 1e-08 RING/U-box superfamily protein (.1) AT5G59550 56 / 2e-08 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G01980 55 / 2e-08 RING/U-box superfamily protein (.1) AT3G10815 54 / 2e-08 RING/U-box superfamily protein (.1) AT3G46620 54 / 3e-08 zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015046 [exp] 177 / 1e-53 AT5G02750 206 / 5e-65 SHOOT GRAVITROPISM 9, RING/U-box superfamily protein (.1) Lus10031422 [exp] 61 / 2e-10 AT5G64920 210 / 5e-66 COP1-interacting protein 8 (.1) Lus10023235 [exp] 56 / 1e-08 AT5G08139 194 / 7e-58 RING/U-box superfamily protein (.1) Lus10008874 [exp] 55 / 2e-08 AT5G08139 198 / 3e-59 RING/U-box superfamily protein (.1) Lus10017383 [exp] 52 / 2e-08 AT3G19950 127 / 8e-37 RING/U-box superfamily protein (.1) Lus10010179 [exp] 53 / 5e-08 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10040783 [exp] 50 / 5e-07 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10013397 [exp] 51 / 6e-07 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10000023 [exp] 49 / 7e-07 AT5G59550 159 / 5e-47 zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G082500 [exp] 110 / 2e-28 AT5G02750 176 / 1e-53 SHOOT GRAVITROPISM 9, RING/U-box superfamily protein (.1) Potri.006G216200 [exp] 102 / 2e-25 AT5G02750 175 / 1e-53 SHOOT GRAVITROPISM 9, RING/U-box superfamily protein (.1) Potri.015G047900 [exp] 58 / 3e-09 AT5G08139 201 / 3e-60 RING/U-box superfamily protein (.1) Potri.001G103900 [exp] 56 / 3e-09 AT4G26400 85 / 2e-19 RING/U-box superfamily protein (.1.2) Potri.012G065300 [exp] 57 / 4e-09 AT5G08139 178 / 4e-51 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 56 / 8e-09 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.006G087800 [exp] 55 / 2e-08 AT5G59550 258 / 1e-83 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G231000 [exp] 54 / 2e-08 AT3G60080 100 / 3e-25 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 54 / 3e-08 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 54 / 3e-08 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10003992 pacid=23157494 polypeptide=Lus10003992 locus=Lus10003992.g ID=Lus10003992.BGIv1.0 annot-version=v1.0 ATGGAATTCCAACCATCAAATACAGATGATCATCAACACCATCATTATCATCAAGAAGAAGGAGAAACAAGAAGGATAATGGAAGCACTCTCCACTCTCT CCACACAATCAATGACCGACCTCACCTCTTCCATCCTCTCCTTAACCGATCACCGCCGCCGACGACTCTCTACCATCCTCACCTCCCCAACCGCCTTCTC CCTCTCCTTATCACACCTACACTCGCTATCCCTTCCTCATAAAACCCTCTTAATCTCCAAACACCTCCTCTCATCACTCCACCTCCTCACCTCCCACTTC CCTATTCCTCCTCCACCGCCGCCAACTTCCTCCTCCTCCTCCATCCACCGTGACCTCGACGCCGCCCTCCTCCTCCTCCACATATGCGACCTCCTCCACC GCCACCCGGACGTCCTCGACACCACCCCCTACGAGGACTGGCGGGTCGCCCTCACCGCCCATTTCGCTGACCTCATTCTGACTCCAGCAGCCGTCGGAGT TTACTACGGGGGCGTGTTGGTGCCGTTTGTGGAGTTGGTGGTGAGGTGCTGGAGGTTTGTCCTTGGTGGTGAATTTGGGTGTGGTGTTGTGGAGGGGGAG ACGCCGGCGGATCCAGCGGCGGTGGTGGGACTGCCATCGGTGAGTGGATCAGAAGGAGGAGGAGAGTGTGTGGTGTGTAAGGAGGAGATGGAGGAAGGGA GGGAGGTGTGTGAGATGCCGTGTGGGCATTTGTTTCATTGGAGTTGTATATTGCCGTGGATTATCAACCGGAATACTTGTCCAACTTGCCGCTTTCAGCT CCCCACGGAGGATGTTCATGGCGAGATCCGGCGGCTATGGGGGTTTCTCGTTAAGGCCGCTAGTGGGGCCCCTGCTTAA
AA sequence Show only first row Show all	>Lus10003992 pacid=23157494 polypeptide=Lus10003992 locus=Lus10003992.g ID=Lus10003992.BGIv1.0 annot-version=v1.0 MEFQPSNTDDHQHHHYHQEEGETRRIMEALSTLSTQSMTDLTSSILSLTDHRRRRLSTILTSPTAFSLSLSHLHSLSLPHKTLLISKHLLSSLHLLTSHF PIPPPPPPTSSSSSIHRDLDAALLLLHICDLLHRHPDVLDTTPYEDWRVALTAHFADLILTPAAVGVYYGGVLVPFVELVVRCWRFVLGGEFGCGVVEGE TPADPAAVVGLPSVSGSEGGGECVVCKEEMEEGREVCEMPCGHLFHWSCILPWIINRNTCPTCRFQLPTEDVHGEIRRLWGFLVKAASGAPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Lus10003992 [exp]	0	1
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Lus10015046 [exp]	2.6	0.8851
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10003143 [exp]	3.5	0.9063
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10001347 [exp]	4.4	0.8615
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10011058 [exp]	4.9	0.8993
AT5G05180			unknown protein		Lus10034251 [exp]	5.3	0.9046
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020353 [exp]	5.5	0.8901
AT4G12970		EPFL9, STOMAGEN	stomagen (.1)		Lus10020408 [exp]	6.0	0.8738
AT2G28780			unknown protein		Lus10024409 [exp]	6.0	0.8918
AT4G21500			unknown protein		Lus10011256 [exp]	6.6	0.8731
AT5G05180			unknown protein		Lus10029012 [exp]	6.9	0.8804

Compare expression of checked genes

Lus10003992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.