Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12620 460 / 2e-162 Protein phosphatase 2C family protein (.1.2) AT3G55050 457 / 3e-161 Protein phosphatase 2C family protein (.1.2) AT3G51370 419 / 2e-146 Protein phosphatase 2C family protein (.1.2) AT5G02760 412 / 8e-144 Protein phosphatase 2C family protein (.1) AT4G38520 412 / 3e-143 Protein phosphatase 2C family protein (.1.2) AT5G66080 407 / 1e-141 Protein phosphatase 2C family protein (.1) AT3G17090 357 / 4e-122 Protein phosphatase 2C family protein (.1.2) AT5G06750 354 / 1e-120 Protein phosphatase 2C family protein (.1.2.3) AT4G33920 347 / 3e-118 Protein phosphatase 2C family protein (.1) AT3G16560 154 / 3e-42 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015047 [exp] 682 / 0 AT3G55050 476 / 7e-169 Protein phosphatase 2C family protein (.1.2) Lus10019893 [exp] 545 / 0 AT3G12620 470 / 2e-166 Protein phosphatase 2C family protein (.1.2) Lus10014024 [exp] 539 / 0 AT3G12620 476 / 1e-168 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 464 / 6e-164 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 463 / 1e-163 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10030302 [exp] 457 / 2e-161 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10041861 [exp] 427 / 2e-149 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 424 / 6e-148 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 421 / 8e-147 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G082800 [exp] 464 / 3e-164 AT3G12620 502 / 4e-179 Protein phosphatase 2C family protein (.1.2) Potri.010G214700 [exp] 456 / 6e-161 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G046900 [exp] 454 / 7e-160 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 439 / 5e-154 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G108500 [exp] 434 / 6e-152 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 433 / 1e-151 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 429 / 5e-150 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.006G192600 [exp] 364 / 1e-124 AT5G06750 572 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.016G045600 [exp] 362 / 7e-124 AT5G06750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.008G104300 [exp] 360 / 5e-123 AT3G17090 568 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10003993 pacid=23157465 polypeptide=Lus10003993 locus=Lus10003993.g ID=Lus10003993.BGIv1.0 annot-version=v1.0 ATGGTGAAGCCTTGTTGGAGACCTTGCATTCAGGATGATACAGTGGGGAGATTGGATGGTTTGTTGTGGCGTATGGATTTAGGAATCCATGCTTACGGCG AATTCTCAATGGCTGTGATCCAAGCCAACCGTGCCTTGGAAGATTACAGCCAGCTCGAATCCGGACCGTTGAGCTCCATGGGATCTCCATCTTCCCCTCA GGGCACCTTTGTCGGCGTCTACGATGGCCATGCCGGTACTGAAGCTTCCAAATTCGTCAGCCATAACCTCTTCTTCAATCTCAAAAATACGGTGTCGGAT AACGGGGAGGCAGTGACGGAATCGGTACTGAAGAAGGCGTTCATGGCAACAGAGGAGGAATACCTGTCGATGGTGAAGAAGCAGTGGATGAACTCACCGC AGATTGCGTCGGCAGGGACTTGTTGCCTTGTCGGATTAATTTGCAACGGGACTCTGTTCGTGGCCAATGCAGGAGATTCAAGAGCTGTGCTTGGTAGAGT GGATAGATCAGGAGGTGGGAGCAGAAGAGCTTCCGCAATCCAATTATCCAACGAACATAACGTCAACATCGAATCCGTAAGAGAAGAGCTCCGATCTTTG CATCCTCACGACTCTCAGGTTGTCATCATGAAGCACAAGAGTTGGCGCGTCAGGGGACTCATTCAGGTGTCGAGATCGATTGGAGACGCCTACCTGAAGA GGGCAGAGTTTCAGAGGGATCCACTGCTACCAAAGTTCAGGTTGACAGAAACATTCGAGAAGCCGATATTGAATTCAGAGCCGGAAGTAACGATACACAG GTTGCAACAAGAGGATCACTTCATAATATTTGCTTCTGATGGTTTGTGGGAGCACCTCAGCAATCAGGAAGCAGTCGACATTGTCCACAATTTCCCTCGA AATGGAATCGCTAAAAGACTGTTGAAATCAGCACTACACGAAGCTGCAAAGAAGAGAGAAATGAGATACGCAGATTTGAAGAAGATCGATGCAGGGGTTA GAAGGCATTTCCACGACGACATAACAGTAGTCATCGTGTTCATAGATCCTCATAAGAGCCCCTTTCCAACTTGTCCCCTTTACTCCATCAAAGGAGGTGG TGTCTCACGCAGCTGA
AA sequence Show only first row Show all	>Lus10003993 pacid=23157465 polypeptide=Lus10003993 locus=Lus10003993.g ID=Lus10003993.BGIv1.0 annot-version=v1.0 MVKPCWRPCIQDDTVGRLDGLLWRMDLGIHAYGEFSMAVIQANRALEDYSQLESGPLSSMGSPSSPQGTFVGVYDGHAGTEASKFVSHNLFFNLKNTVSD NGEAVTESVLKKAFMATEEEYLSMVKKQWMNSPQIASAGTCCLVGLICNGTLFVANAGDSRAVLGRVDRSGGGSRRASAIQLSNEHNVNIESVREELRSL HPHDSQVVIMKHKSWRVRGLIQVSRSIGDAYLKRAEFQRDPLLPKFRLTETFEKPILNSEPEVTIHRLQQEDHFIIFASDGLWEHLSNQEAVDIVHNFPR NGIAKRLLKSALHEAAKKREMRYADLKKIDAGVRRHFHDDITVVIVFIDPHKSPFPTCPLYSIKGGGVSRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12620			Protein phosphatase 2C family ...		Lus10003993 [exp]	0	1
AT3G55050			Protein phosphatase 2C family ...		Lus10015047 [exp]	1.0	0.9730
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10034768 [exp]	2.0	0.8805
					Lus10026796 [exp]	3.0	0.8655
					Lus10015218 [exp]	5.1	0.9187
AT2G22140		ATEME1B	essential meiotic endonuclease...		Lus10005803 [exp]	5.2	0.8234
AT2G29640		JOSL	JOSEPHIN-like protein (.1)		Lus10040691 [exp]	5.5	0.8781
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10042946 [exp]	7.1	0.8972
AT5G47920			unknown protein		Lus10002566 [exp]	7.3	0.8310
AT2G38870			Serine protease inhibitor, pot...		Lus10014740 [exp]	7.5	0.8715
AT5G05340			Peroxidase superfamily protein...		Lus10009933 [exp]	7.7	0.8760

Compare expression of checked genes

Lus10003993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.