Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02790 324 / 4e-113 GSTL3 Glutathione transferase L3, Glutathione S-transferase family protein (.1) AT5G02780 305 / 1e-105 GSTL1 glutathione transferase lambda 1 (.1.2) AT3G55040 288 / 3e-98 GSTL2 glutathione transferase lambda 2 (.1) AT1G19570 70 / 2e-14 DHAR5, DHAR1, ATDHAR1 DEHYDROASCORBATE REDUCTASE 5, dehydroascorbate reductase (.1.2) AT1G75270 59 / 3e-10 DHAR2 dehydroascorbate reductase 2 (.1) AT1G53680 51 / 1e-07 ATGSTU28 glutathione S-transferase TAU 28 (.1) AT1G78380 50 / 4e-07 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) AT2G02380 48 / 2e-06 ATGSTZ2 glutathione S-transferase (class zeta) 2 (.1) AT1G78370 47 / 2e-06 ATGSTU20 glutathione S-transferase TAU 20 (.1) AT2G02390 46 / 4e-06 GST18, ATGSTZ1 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015049 [exp] 349 / 9e-123 AT5G02790 322 / 3e-112 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Lus10040347 [exp] 291 / 6e-99 AT3G55040 290 / 8e-98 glutathione transferase lambda 2 (.1) Lus10019895 [exp] 274 / 1e-88 AT5G12130 399 / 6e-135 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1) Lus10026199 [exp] 60 / 5e-10 AT1G17160 496 / 8e-173 pfkB-like carbohydrate kinase family protein (.1.2) Lus10042468 [exp] 58 / 6e-10 AT1G78380 306 / 6e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10014022 [exp] 59 / 7e-10 AT5G12130 402 / 7e-137 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1) Lus10042469 [exp] 56 / 2e-09 AT1G78380 284 / 5e-98 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10042470 [exp] 56 / 3e-09 AT1G78380 291 / 1e-100 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10030362 [exp] 55 / 8e-09 AT1G17170 210 / 7e-69 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G083500 [exp] 364 / 5e-129 AT5G02790 340 / 2e-119 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Potri.006G133500 [exp] 355 / 3e-125 AT5G02790 325 / 1e-113 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Potri.008G046800 [exp] 303 / 5e-104 AT3G55040 318 / 4e-109 glutathione transferase lambda 2 (.1) Potri.010G214800 [exp] 100 / 4e-26 AT5G02780 98 / 6e-26 glutathione transferase lambda 1 (.1.2) Potri.011G140400 [exp] 62 / 2e-11 AT1G78380 308 / 9e-108 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436500 [exp] 57 / 1e-09 AT1G78380 303 / 2e-105 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G140800 [exp] 55 / 5e-09 AT1G78380 318 / 1e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437000 [exp] 55 / 5e-09 AT1G78380 308 / 1e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G114000 [exp] 54 / 8e-09 AT1G17180 265 / 2e-90 glutathione S-transferase TAU 25 (.1) Potri.001G437200 [exp] 53 / 3e-08 AT1G78380 308 / 2e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003994 pacid=23157486 polypeptide=Lus10003994 locus=Lus10003994.g ID=Lus10003994.BGIv1.0 annot-version=v1.0 ATGGCTGCCACTGCTTTGGACCGAACCGTGCCGGAGAATTTGCCTCCTTCATTGGATTCCACGGCGGCACAGCCTCCTCTCTTCGACGGAACTACCAGGC TGTACACGGCTTATATCTGTCCCTATGCTCAACGAGTGTGGATCACTAGGAATTTCAAGGGGTTGCAAAATGAGATAAAGTTGGTTCCTTTGAATCTTCA GGACAGGCCAACTTGGTATAAAGACAAGGTTTATCCTCTCAATAAGGTCCCAGCCCTTGAACACAATGGAAAAATCATTGGGGAGAGTCTAGACTTGATT AAATACTTGGATAGCAACTTTGAAGGACCTTCTCTTACTCCTGGTGATCGTGTTAAGAGACAGTTTGCTGATGAGTTGCTGTCATCCTGCGACACCTTTG TTGGATCTGTGTATTCTTCTTTCAAGGGAGATCTGGCCACAGAAGTTGATCCTGTTTTTGATTATCTGGAAAATGCGCTTTCAAGGTTCCATGATGGGCC CTTCTTCCTTGGCCAATTCAGTCTAGTGGACATAGCCTACATTCCTTTTATTGAAAGATTCCAGGTGTTCTTATCTGAAGTGTTCAAGTATGATATTACT TCAGGCAGGCCTGGACTTGCAGCTTTGATTGAGGAGTGTAACAAAATTGAGGCTTACAAGCCAACAAAAGTTGATCCTAAGGAGACAGTTCTGAACTTGA GCAAGCGTTTCCTGGTAACCGATGTTCATTTACTGTAA
AA sequence Show only first row Show all	>Lus10003994 pacid=23157486 polypeptide=Lus10003994 locus=Lus10003994.g ID=Lus10003994.BGIv1.0 annot-version=v1.0 MAATALDRTVPENLPPSLDSTAAQPPLFDGTTRLYTAYICPYAQRVWITRNFKGLQNEIKLVPLNLQDRPTWYKDKVYPLNKVPALEHNGKIIGESLDLI KYLDSNFEGPSLTPGDRVKRQFADELLSSCDTFVGSVYSSFKGDLATEVDPVFDYLENALSRFHDGPFFLGQFSLVDIAYIPFIERFQVFLSEVFKYDIT SGRPGLAALIEECNKIEAYKPTKVDPKETVLNLSKRFLVTDVHLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10003994 [exp]	0	1
AT1G50670			OTU-like cysteine protease fam...		Lus10040075 [exp]	1.4	0.8784
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034702 [exp]	4.9	0.8599
AT5G04750			F1F0-ATPase inhibitor protein,...		Lus10034146 [exp]	6.0	0.8689
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10021300 [exp]	7.2	0.8469
AT5G01800			saposin B domain-containing pr...		Lus10014162 [exp]	8.4	0.8576
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10036297 [exp]	8.8	0.8479
AT4G31130			Protein of unknown function (D...		Lus10030037 [exp]	9.8	0.8219
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10022524 [exp]	10.0	0.8530
AT2G23090			Uncharacterised protein family...		Lus10011535 [exp]	11.2	0.8408
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10002491 [exp]	12.8	0.8716

Compare expression of checked genes

Lus10003994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.