Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02800 295 / 1e-100 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G13160 285 / 1e-95 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G18610 278 / 3e-92 Protein kinase superfamily protein (.1.2) AT2G28590 273 / 2e-91 Protein kinase superfamily protein (.1) AT1G07870 272 / 4e-91 Protein kinase superfamily protein (.1.2) AT3G20530 266 / 4e-89 Protein kinase superfamily protein (.1) AT3G24790 238 / 2e-78 Protein kinase superfamily protein (.1) AT3G07070 239 / 4e-78 Protein kinase superfamily protein (.1) AT1G20650 237 / 7e-78 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT1G61860 236 / 2e-77 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014019 [exp] 330 / 3e-113 AT5G02800 532 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10019897 [exp] 326 / 7e-113 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10036499 [exp] 302 / 4e-103 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041426 [exp] 300 / 3e-102 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 295 / 2e-100 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 295 / 2e-100 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 282 / 5e-94 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 282 / 5e-94 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 275 / 1e-91 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G133300 [exp] 305 / 5e-104 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.008G046500 [exp] 301 / 5e-103 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G215100 [exp] 298 / 6e-102 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.009G026500 [exp] 282 / 3e-95 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 284 / 1e-94 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G234100 [exp] 278 / 9e-94 AT1G07870 590 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G060800 [exp] 279 / 2e-93 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 279 / 3e-93 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 279 / 9e-93 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G421400 [exp] 266 / 3e-89 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10003995 pacid=23157485 polypeptide=Lus10003995 locus=Lus10003995.g ID=Lus10003995.BGIv1.0 annot-version=v1.0 ATGAAAATCGCGGCAGGAGCAGCGAAAGGACTCGAGCATTTGCATGACAATGTAAAGCCTCCTGTCATCTACAGAGATCTTAAATGCTCAAACATTTTAC TCGACAGAGGATACCATCCCAAGTTATCCGATTTCGGGTTGGCTAAACTCGGCCCTGTGGGTGACAACACCCATGTGTCCACAAGAGTTATGGGTACATT CGGGTATTGTGCTCCTGAATACGCAATGACTGCCCAATTGACCTTGAAATCAGATGTTTACAGCTTCAGGGTTGTGTTGTTGGACATCATTCCTGGAAGG AGAGCATTCGACACCTGCAAACCGGCAGCCGAGCAGAATCTGGTAGCTTGGGCAAGGTCGATGTTCAACGATCGGAGGAAATTGACAGAAATGGCTGATC CGGTGATGGGTGGACGGTTTCCTGCGAGGGCAATGTACCAAGCTTTAGCGGTTGCAGGAATGTGCGTTCAGGAACAGCCTCACATGAGGCCTGCAATGGC TGATGTTGTCACTGCTTTGTCTCACTTAGCTTCACAGAAGAGTGCAACTGAGAGGTAG
AA sequence Show only first row Show all	>Lus10003995 pacid=23157485 polypeptide=Lus10003995 locus=Lus10003995.g ID=Lus10003995.BGIv1.0 annot-version=v1.0 MKIAAGAAKGLEHLHDNVKPPVIYRDLKCSNILLDRGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTFGYCAPEYAMTAQLTLKSDVYSFRVVLLDIIPGR RAFDTCKPAAEQNLVAWARSMFNDRRKLTEMADPVMGGRFPARAMYQALAVAGMCVQEQPHMRPAMADVVTALSHLASQKSATER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10003995 [exp]	0	1
AT5G18610			Protein kinase superfamily pro...		Lus10015051 [exp]	6.0	0.6682
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10015050 [exp]	6.0	0.6546
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Lus10030030 [exp]	11.0	0.6391
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041680 [exp]	22.2	0.5996
					Lus10029490 [exp]	25.7	0.6292
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10021185 [exp]	26.6	0.6609
AT5G49150		GEX2, ATGEX2	gamete expressed 2 (.1)		Lus10027014 [exp]	28.6	0.5936
AT5G36930			Disease resistance protein (TI...		Lus10042714 [exp]	37.7	0.6273
AT5G03795			Exostosin family protein (.1)		Lus10039142 [exp]	39.2	0.6152
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Lus10017024 [exp]	52.6	0.5621

Compare expression of checked genes

Lus10003995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.