Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02820 676 / 0 BIN5, RHL2 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) AT3G13170 225 / 7e-70 ATSPO11-1 Spo11/DNA topoisomerase VI, subunit A protein (.1) AT1G63990 203 / 4e-61 SPO11-2 sporulation 11-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015052 [exp] 547 / 0 AT5G02820 495 / 2e-176 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10004416 [exp] 172 / 1e-49 AT3G13170 479 / 2e-170 Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10016612 [exp] 145 / 6e-38 AT3G13170 423 / 7e-145 Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10024675 [exp] 122 / 2e-32 AT1G63990 287 / 5e-97 sporulation 11-2 (.1) Lus10032302 [exp] 108 / 2e-27 AT1G63990 253 / 8e-84 sporulation 11-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G132600 [exp] 699 / 0 AT5G02820 700 / 0.0 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) Potri.001G366700 [exp] 226 / 3e-70 AT3G13170 499 / 2e-178 Spo11/DNA topoisomerase VI, subunit A protein (.1) Potri.001G099100 [exp] 185 / 3e-54 AT1G63990 603 / 0.0 sporulation 11-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04406 [flax] [poplar] TP6A_N Type IIB DNA topoisomerase
Representative CDS sequence Show only first row Show all	>Lus10003996 pacid=23157455 polypeptide=Lus10003996 locus=Lus10003996.g ID=Lus10003996.BGIv1.0 annot-version=v1.0 ATGGCAGACCCTAAGTTGAAGAAGCGCCGCCGTCCGGACAATGATTCCGACGCACCTGACCTCCCCTTCAAGAACAGCCTCAAACCTGACTCCGCCATCC TCCAAACCCTAGAAACTCTCCTCAAATCCACTGTTGCCGCCGCCTCCTCTTCCTCCTCCAGACCGCGATCCCTTTCCGACCTCGCCCTCGCCGCCATGTG TCGCGAGGTCACTGACCAGTCCCCTGCCTCCGTCCAGTCCAACATCGAGTCCTTAATCCTCTCACTCGCTCACTCCATCCTCTCCGGCGACGGCTTCTCC TTCAACGTCCCCTCACGCGCCGCCACCAACCAGCTCTACGTCCCCGAGCTGGACCGCATCGTGTTAAAAGACAAGAACACCCTCCGCCCTTTCGCCAACA TCTCCTCCGTCCGCAAGTCCACCGTCACCACCAAGATCATCTCCTTAATCCACCAGCTCTGCCTCAAGAACATCCACGTCACCAAGCGAGATCTCTTCTA CACCGACGTCAAGCTCTTCCAGGACCAGACGCAGTCCGATGCTGTCCTCGACGACGTCTCCTGCATCCTCGGATGCACCAGATCTTCCCTCAACGTTGTT GCTGCGGAGAAAGGAGTCGTCGTTGGGAGGCTCATCTTCAGTGACAACGGCGACATGATCGATTGCACCAAGATGGGGATGGGAGGGAAAGCTATTCCTC CCAACATAGATAGAGTTGGGGATATGCAGAGTGATGCCTTGTTCATACTGTTGGTGGAGAAGGATGCAGCTTACATGAGGTTGGCCGAGGATAGATTCTA CAATCGGTTTCCTTGTATCATCGTGACGGCCAAAGGACAGCCAGATGTAGCAACAAGGCTCTTCTTGAGGAAGATGAAGATGGAGTTGAAACTTCCTGTT TTGGCATTGGTGGATAGTGATCCTTACGGGCTTAAGATCCTATCGGTTTATGGCTGTGGATCTAAGAACATGTCTTATGATAGTGCAAATTTAACTACTC CTGATATTAAGTGGTTAGGGATCCGACCTAGTGATCTTGATAAGTATAAGATACCGGAGCAATGCAGGCTGCCCATGACTGAGCAGGATATCAAGACAGG GAAGGACTTGCTAGAAGAGGACTTTGTGAAGAAGAATCCAGCTTGGGTTGAGGAGCTGACCTTGATGGTGAAGACTAAGCAGAAGGCTGAGATTCAGGCT TTGAGCTCTTTTGGGTTTCAGTATCTGTCTGAGGTGTACCTGCCACTAAAGCTGCAGCAGCAGGATTGGATTTGA
AA sequence Show only first row Show all	>Lus10003996 pacid=23157455 polypeptide=Lus10003996 locus=Lus10003996.g ID=Lus10003996.BGIv1.0 annot-version=v1.0 MADPKLKKRRRPDNDSDAPDLPFKNSLKPDSAILQTLETLLKSTVAAASSSSSRPRSLSDLALAAMCREVTDQSPASVQSNIESLILSLAHSILSGDGFS FNVPSRAATNQLYVPELDRIVLKDKNTLRPFANISSVRKSTVTTKIISLIHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVSCILGCTRSSLNVV AAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPV LALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPAWVEELTLMVKTKQKAEIQA LSSFGFQYLSEVYLPLKLQQQDWI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02820		BIN5, RHL2	ROOT HAIRLESS 2, BRASSINOSTERO...		Lus10003996 [exp]	0	1
AT5G02820		BIN5, RHL2	ROOT HAIRLESS 2, BRASSINOSTERO...		Lus10015052 [exp]	1.0	0.9359
AT4G35490		MRPL11	mitochondrial ribosomal protei...		Lus10035432 [exp]	9.9	0.9136
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10035211 [exp]	13.2	0.9230
AT5G60960		PNM1	PPR protein localized to the n...		Lus10034673 [exp]	13.6	0.9279
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10032045 [exp]	14.7	0.9106
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Lus10039636 [exp]	14.7	0.9183
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Lus10024950 [exp]	14.7	0.9157
AT3G15000			cobalt ion binding (.1)		Lus10043130 [exp]	15.7	0.9169
AT3G49910			Translation protein SH3-like f...		Lus10018139 [exp]	16.7	0.9215
AT3G55340		PHIP1	phragmoplastin interacting pro...		Lus10030327 [exp]	18.9	0.9107

Compare expression of checked genes

Lus10003996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.