Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49250 201 / 5e-61 IDN1, DMS3 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) AT5G24280 129 / 6e-33 GMI1 gamma-irradiation and mitomycin c induced 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030244 [exp] 559 / 0 AT3G49250 241 / 2e-76 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10023253 [exp] 231 / 5e-73 AT3G49250 359 / 7e-122 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10008855 [exp] 201 / 2e-61 AT3G49250 345 / 2e-116 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10008854 [exp] 192 / 8e-59 AT3G49250 289 / 1e-95 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10022400 [exp] 157 / 2e-42 AT5G24280 1270 / 0.0 gamma-irradiation and mitomycin c induced 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G172000 [exp] 260 / 5e-85 AT3G49250 311 / 1e-103 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Potri.015G012600 [exp] 248 / 3e-79 AT3G49250 435 / 3e-151 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Potri.012G016000 [exp] 241 / 8e-77 AT3G49250 426 / 8e-148 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Potri.012G016100 [exp] 149 / 9e-40 AT5G24280 1107 / 0.0 gamma-irradiation and mitomycin c induced 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003997 pacid=23153355 polypeptide=Lus10003997 locus=Lus10003997.g ID=Lus10003997.BGIv1.0 annot-version=v1.0 ATGAGGAAGGATGCAAACCGTCTCGATGAGATGATGATAAATTTGGATGATGTTATGGCAAAGCACCATCGTTCACAAGGCAGCAGTAAGGCTGGCGAAG AAGAGAAAAGGGAAACTGAAGAGAATATAAAAGAGCAGAGATCCAGTGCAGCAGGGATCATTCTGGAGTTCAAGGCTCGTTACCCTGAGATGGCATCTGA TCTATCCATGTTTAGGGACACGGTTGGGATTGTGGCTACTCTTGCCACCGTTGATAACGACCATCTCAGCAGGATGCTGTCAAAGTACTTAGGAAAGGAG AAGATGCTAGGAGTTGTATGCAGGACATTTGGTAGTGGTGTGAAGAACATGGAGAAGTACAACAAATTTCCAGGAAGCAGCATCAGCATGATTAACCCCA GCAAGGGAGTCCATGGCTTTGCAACTTCACTGGGGATGAGACTCCATGGCCGATTCCTTGTCATTTGCCTTGAAGAACTCATTCCTTTCCAAGGTGGGTT ACTGGATAATGATCTCCAAAGGAGACTGGACCTCCCAGCCCCAACAATGCCCAATGGGGAAACCCCAAGTGGATTTCTGGGGTTCGCAGTGAATCTGTTG CATATGGAGAATCGAGACTTGTGCTATATCACATTTGACGGCTATGGTCTGAGGGAGACTCTGTTCTATACACTCTTCTCTCAACTTCAGGTCTACAAAA CCAAAGCTGATCTCCGGAATGCTTTCCCTTGCATCACTCATGGTGCAGTGTCGTTGGATGGCGGGATGGTTCAGGAACCCGGCATCTTCACTCTTGGCCA TGAGGAAGACGTGGCCGTGAAGTTCCCTGTAGTCCCACCTGTCGGTGACCGGAACAGCTTTCCGGCAGCATACACAGAAGCAGAAAGCATGATGAGAAGG GCTATGTGGGACCAACTCCATCTTGCTTCCAATATAAGGAGAGAACAGCTACTGCTTGGAGGTCTAAAGACCAAACTGGCCCGCCGCTACTGA
AA sequence Show only first row Show all	>Lus10003997 pacid=23153355 polypeptide=Lus10003997 locus=Lus10003997.g ID=Lus10003997.BGIv1.0 annot-version=v1.0 MRKDANRLDEMMINLDDVMAKHHRSQGSSKAGEEEKRETEENIKEQRSSAAGIILEFKARYPEMASDLSMFRDTVGIVATLATVDNDHLSRMLSKYLGKE KMLGVVCRTFGSGVKNMEKYNKFPGSSISMINPSKGVHGFATSLGMRLHGRFLVICLEELIPFQGGLLDNDLQRRLDLPAPTMPNGETPSGFLGFAVNLL HMENRDLCYITFDGYGLRETLFYTLFSQLQVYKTKADLRNAFPCITHGAVSLDGGMVQEPGIFTLGHEEDVAVKFPVVPPVGDRNSFPAAYTEAESMMRR AMWDQLHLASNIRREQLLLGGLKTKLARRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10003997 [exp]	0	1
AT2G02850		ARPN	plantacyanin (.1)		Lus10028640 [exp]	5.3	0.7569
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10040748 [exp]	10.1	0.6340
AT2G02850		ARPN	plantacyanin (.1)		Lus10028641 [exp]	14.2	0.7336
AT5G50410			unknown protein		Lus10017246 [exp]	16.1	0.7214
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10006702 [exp]	16.9	0.6459
					Lus10000811 [exp]	19.2	0.7241
AT2G02850		ARPN	plantacyanin (.1)		Lus10018938 [exp]	21.7	0.7140
AT1G30320			Remorin family protein (.1)		Lus10038522 [exp]	23.9	0.6779
AT5G52850			Pentatricopeptide repeat (PPR)...		Lus10038834 [exp]	39.2	0.6562
AT3G01435			Expressed protein (.1)		Lus10003331 [exp]	40.5	0.7047

Compare expression of checked genes

Lus10003997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.