Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00980 225 / 2e-67 zinc knuckle (CCHC-type) family protein (.1) AT4G10920 119 / 2e-31 KELP transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2) AT5G09250 58 / 3e-10 KIWI ssDNA-binding transcriptional regulator (.1.2) AT5G09240 51 / 8e-08 ssDNA-binding transcriptional regulator (.1.2.3) AT5G48050 46 / 6e-05 unknown protein AT5G42060 42 / 0.0001 DEK, chromatin associated protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030245 [exp] 285 / 1e-94 AT4G10920 136 / 3e-41 transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2) Lus10032410 [exp] 97 / 3e-23 AT4G10920 169 / 2e-54 transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2) Lus10023061 [exp] 72 / 2e-14 AT4G10920 132 / 7e-40 transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2) Lus10013733 [exp] 59 / 1e-10 AT5G09250 139 / 2e-44 ssDNA-binding transcriptional regulator (.1.2) Lus10039207 [exp] 49 / 5e-07 AT5G09250 125 / 1e-38 ssDNA-binding transcriptional regulator (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G171900 [exp] 305 / 4e-98 AT4G00980 373 / 7e-125 zinc knuckle (CCHC-type) family protein (.1) Potri.001G089400 [exp] 115 / 7e-30 AT4G10920 152 / 5e-48 transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2) Potri.007G101100 [exp] 56 / 2e-09 AT5G09250 115 / 7e-35 ssDNA-binding transcriptional regulator (.1.2) Potri.001G247404 [exp] 48 / 1e-05 AT1G21280 84 / 2e-18 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08766 [flax] [poplar] DEK_C DEK C terminal domain CL0609 [flax] [poplar] sPC4_like PF02229 [flax] [poplar] PC4 Transcriptional Coactivator p15 (PC4)
Representative CDS sequence Show only first row Show all	>Lus10003998 pacid=23153376 polypeptide=Lus10003998 locus=Lus10003998.g ID=Lus10003998.BGIv1.0 annot-version=v1.0 ATGGAGCCGGAGATTCAGTGCAAAATCAGGAAGACGGTGGTCAACATTCTCAAAGATGCCGATATGAGCCAGGCTACCGAGTTTAAAGTCCGAGTCTTGG CCTCCATGCGACTCGGCATGGACCTTTCCGACATCGAGCACAAGAAGTTCGTCAGAGAAGTTCTCGAGTCCTATCTTCTTTCATCGGCGGAGCCGCAGAT CGGCGACGCCGCTGTCCTCGAAGGAGAGACCGCGCAGCGGGAAACGGCGACGAAGAAGGAGCTCGAGCTATCGAATAGACGGAACGTAACGGTTAGTGAT TACAAGGGGAAGTCTCTGGTTTCTATCAGAGAGTATTACTTGAAAAATGGCGCGGAGCTTCCTTCCAGACAAGGAATTAGTTTGACAACTGAACAATGGA CAGTGTTAAAGAAGAGTTTTGGTGACATAGACAGTGGTATTACAGTTATGCAATCTAGGTCGAGATCCGATCCAAATGGTTCAGTGATGGATAAGTGTAA TACAGTATCGGAGCCGCTTCGTAAGCAGACCTCCCCCCATCCAGCAACCTTAACTTCTGATGATCAAGTTGAAAAGGACCGGAATGGGGTAACGAATTCT ACTCCGACTGAAGAACAAAGTGAGAGAGTTTCTAATGGGGCTACTACTTCCACTCCTTGTGACGAAACTCCTAATCCATCATCACTTGCTTCTACCTCCT GCAAACAGGCAGTGGCTAATCCAGATATTGCTTCATCCCTCAAAGTCAACATCTCCACTCCTGTTGCTGCAACTCCTGCAGCAGATGATGTTGCTCGAAT CAATTTGGAACGTTTTGATGGGAAGAACTACAAGAGCTGGGTTAGAAACATGGAGCTTTTCTTGAAACAGTTGAAGGTTTTACATGTACTCTCCGAAGAC CCGCCTCTTGCTAGAGCTCCCGAGGTCAAGAAGTGGCTGGATGAAGACCATATGTGTCGGCTCCACATTCTGAATTCCTTATGCGATTCGCTCTATCATC AATTTTGGAAGACAACCAAGACGGCAAAGGAGTTGTGGGATCAGCTGAACCAAATTTATCTCTTTGAGGAGTTTGGATCGAAGAGAGCTCAAGTTAGGAA GTACATTGAGTTTAAAATCGTTGACGATAGATCGATTGTTGACCAAGTACAAGAATTAAACAGCATAGCTGATGCCATTGTAGCTGCCGGAACTACTGTT CAAGAGTACTTTCATGTCAGTGCTGTCATAGCAAAGCTTCCACCTTCATGGAAGAGTTTCTGCAACAGGTTTGTGCAGATGGAGCATCTGCCTTTTACGT TGTTGATGAAGATGATAAAGGCCGAGGAAGAGTCACGCGAGCGAAACAAGGTAGGGGAATTTCCCACACGTGCGAATAATCATCATATCGTTATGAATGT TGTGCCGAGAACTCGAGAGGTGAGGAGACCGAGTATGCAGTGGAAGAGGCCGGAAATCGAAACGGATGCCGAGAAGAAGAACAGGATGCAAGTCTGTTAT TGTTGTGGGAAGAAGGGTCACATTTCGAAGCAGTGTCCCGATCAGAAATTCGATAACGAAGCTGGCTATGAAAAGCATCGTGATACATAA
AA sequence Show only first row Show all	>Lus10003998 pacid=23153376 polypeptide=Lus10003998 locus=Lus10003998.g ID=Lus10003998.BGIv1.0 annot-version=v1.0 MEPEIQCKIRKTVVNILKDADMSQATEFKVRVLASMRLGMDLSDIEHKKFVREVLESYLLSSAEPQIGDAAVLEGETAQRETATKKELELSNRRNVTVSD YKGKSLVSIREYYLKNGAELPSRQGISLTTEQWTVLKKSFGDIDSGITVMQSRSRSDPNGSVMDKCNTVSEPLRKQTSPHPATLTSDDQVEKDRNGVTNS TPTEEQSERVSNGATTSTPCDETPNPSSLASTSCKQAVANPDIASSLKVNISTPVAATPAADDVARINLERFDGKNYKSWVRNMELFLKQLKVLHVLSED PPLARAPEVKKWLDEDHMCRLHILNSLCDSLYHQFWKTTKTAKELWDQLNQIYLFEEFGSKRAQVRKYIEFKIVDDRSIVDQVQELNSIADAIVAAGTTV QEYFHVSAVIAKLPPSWKSFCNRFVQMEHLPFTLLMKMIKAEEESRERNKVGEFPTRANNHHIVMNVVPRTREVRRPSMQWKRPEIETDAEKKNRMQVCY CCGKKGHISKQCPDQKFDNEAGYEKHRDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00980			zinc knuckle (CCHC-type) famil...		Lus10003998 [exp]	0	1
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10041587 [exp]	2.2	0.9499
AT2G33340		MAC3B	MOS4-associated complex 3B (....		Lus10023728 [exp]	2.8	0.9441
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10005023 [exp]	5.3	0.9430
AT2G04235			unknown protein		Lus10016054 [exp]	10.2	0.9431
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033460 [exp]	12.0	0.9195
AT3G05470			Actin-binding FH2 (formin homo...		Lus10015175 [exp]	12.0	0.9095
AT5G57590		BIO1	biotin auxotroph 1, adenosylme...		Lus10003630 [exp]	12.5	0.9285
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10038447 [exp]	14.3	0.9033
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10034111 [exp]	14.9	0.9361
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10011936 [exp]	16.0	0.9333

Compare expression of checked genes

Lus10003998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.