Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01300 610 / 0 Eukaryotic aspartyl protease family protein (.1) AT3G61820 517 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G25510 361 / 2e-120 Eukaryotic aspartyl protease family protein (.1) AT3G18490 360 / 5e-120 Eukaryotic aspartyl protease family protein (.1) AT3G20015 347 / 3e-115 Eukaryotic aspartyl protease family protein (.1) AT5G10770 249 / 3e-77 Eukaryotic aspartyl protease family protein (.1) AT2G03200 243 / 4e-75 Eukaryotic aspartyl protease family protein (.1) AT5G10760 238 / 8e-73 Eukaryotic aspartyl protease family protein (.1) AT2G42980 231 / 7e-70 Eukaryotic aspartyl protease family protein (.1) AT3G59080 231 / 1e-69 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030246 [exp] 554 / 0 AT1G01300 472 / 3e-165 Eukaryotic aspartyl protease family protein (.1) Lus10017362 [exp] 309 / 5e-100 AT3G20015 549 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042978 [exp] 308 / 8e-100 AT3G18490 504 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10010157 [exp] 300 / 1e-96 AT3G20015 545 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 269 / 3e-85 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10025702 [exp] 273 / 3e-84 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 258 / 7e-80 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10023445 [exp] 246 / 3e-76 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 243 / 4e-75 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G171700 [exp] 653 / 0 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 629 / 0 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 365 / 1e-121 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 362 / 1e-120 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 358 / 4e-119 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 352 / 1e-116 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 270 / 4e-84 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.006G232600 [exp] 263 / 2e-82 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 248 / 6e-77 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.016G000600 [exp] 246 / 5e-76 AT5G10770 286 / 2e-91 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10003999 pacid=23153358 polypeptide=Lus10003999 locus=Lus10003999.g ID=Lus10003999.BGIv1.0 annot-version=v1.0 ATGGAAGGTAAAGCGAGAAGAATCTTCCCTTTCCTCTTCTTCTTCTCCTTCACCTTCTTCGTTTCCCTCTCCTCTTCTCTCCAATCCCAAACCCTAACTC TCACCACCCTCCCTTCCCCTCCTCAATCCCTCTCCTGGTCCGACTCCGATGCAGCTGATTCAGATCCCTTGACTACTTCATCAGATCTCCTCACCTCCGC CGCCGAATCCACCTCCGCCTCCATTTTCTCCGTCCAACTCCACCACGTCGACGCTCTCATTTCCAATTCCACTCCTCAGCAGCTTTTCAACTCCAGGCTC ATCCGCGACGCATCTCGCGTGAAAATAATCGAATCTGTCTCCGCCGCCGCTGCCAGCGGCGGAGCTGGATTCAGCAGCTCCGTCATCTCCGGATTGGCTC AAGGAAGCGGAGAGTACTTCACTCGGCTCGGAGTCGGGACTCCTCCGAGGTATGTTTACATGGTTTTGGACACAGGGAGCGATATTGTTTGGCTGCAGTG TGCTCCTTGCAAGAAATGCTACTCTCAGGCGGATCCGGTTTTCGATCCGAGGAAATCGAGCTCTTACTCCGGAATCCCTTGTGGAGCGCCGTTATGCCGC CGTCTGGATTCTCCGGGTTGCAATTCGAAGAAGCAGACGTGTCTTTACCAGGTCTCATACGGAGACGGATCGTTCACCACCGGCGAATTCTCCACTGAAA CGCTGACGTTCCGGAAGACTAGGGTTCCCCGTGTTGCGGTGGGATGCGGCCACGACAATGAAGGACTGTTCGTCGGAGCGGCGGGGTTGTTAGGTCGAGG TAGGGGGAAGCTGTCCTTCCCGGCGCAGACTGGCCGGAGATTCAACCGGAAGTTCTCTTACTGCCTTGTTGACCGGTCGGCGTCGGCAAAGCCTTCGTCG ATGGTGTTCGGCGACAAAGCCGTGTCTCGGACCGCTCGTTTCACGCCGTTGATTTCAAATCCGAAGCTGGACACGTTCTACTACGTGGAGCTTCTCGGGA TGAGTGTGGGCGGGACCCGTGTCCCGAGAATCACGGCCTCGCTTTTCAAACTCAACCCGGCGGGCAACGGCGGGGTGATACTCGACTCGGGCACGTCCGT CACCAGGCTGACCCGACCCGCTTACATAGCCCTCCGCGATGCGTTCCGGGTCGGGGCGTCGAACCTGAAGCGGGCGGCGGACTTCTCCCTCTTCGACACT TGCTTTGACCTTTCCGGGAAGACCGAAGTCAAAGTCCCGACCGTGGTGCTGCATTTCCGTGGGGCTGACGTGTCGCTGCCGGCTTCGAACTACTTAATCC CCGTGGATACCTCAGGAACGTTCTGTTTCGCGTTTGCCGGGACGATGAGCGGGCTGTCGATCATCGGGAACATCCAGCAGCAAGGGTTCCGGGTGGTTTA CGACTTGAGTGGGTCGCGGGTCGGGTTTGCCCCGCGTGGGTGCGTGTGA
AA sequence Show only first row Show all	>Lus10003999 pacid=23153358 polypeptide=Lus10003999 locus=Lus10003999.g ID=Lus10003999.BGIv1.0 annot-version=v1.0 MEGKARRIFPFLFFFSFTFFVSLSSSLQSQTLTLTTLPSPPQSLSWSDSDAADSDPLTTSSDLLTSAAESTSASIFSVQLHHVDALISNSTPQQLFNSRL IRDASRVKIIESVSAAAASGGAGFSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDIVWLQCAPCKKCYSQADPVFDPRKSSSYSGIPCGAPLCR RLDSPGCNSKKQTCLYQVSYGDGSFTTGEFSTETLTFRKTRVPRVAVGCGHDNEGLFVGAAGLLGRGRGKLSFPAQTGRRFNRKFSYCLVDRSASAKPSS MVFGDKAVSRTARFTPLISNPKLDTFYYVELLGMSVGGTRVPRITASLFKLNPAGNGGVILDSGTSVTRLTRPAYIALRDAFRVGASNLKRAADFSLFDT CFDLSGKTEVKVPTVVLHFRGADVSLPASNYLIPVDTSGTFCFAFAGTMSGLSIIGNIQQQGFRVVYDLSGSRVGFAPRGCV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01300			Eukaryotic aspartyl protease f...		Lus10003999 [exp]	0	1
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10040358 [exp]	1.0	0.8707
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Lus10018314 [exp]	1.7	0.8190
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10005459 [exp]	5.3	0.8117
AT1G01300			Eukaryotic aspartyl protease f...		Lus10030246 [exp]	6.5	0.8323
AT1G28390			Protein kinase superfamily pro...		Lus10039770 [exp]	6.9	0.7701
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10042112 [exp]	7.4	0.7905
AT2G30990			Protein of unknown function (D...		Lus10020709 [exp]	12.5	0.7093
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10023476 [exp]	13.4	0.7478
AT5G62620			Galactosyltransferase family p...		Lus10036686 [exp]	22.4	0.7230
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10039241 [exp]	27.1	0.7370

Compare expression of checked genes

Lus10003999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.