Plant FIBer expression Database

Lus10004000 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G61800 587 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030247
[exp]
1081 / 0 AT3G61800 642 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G171600
[exp]
762 / 0 AT3G61800 623 / 0.0 unknown protein
Potri.014G099300
[exp]
751 / 0 AT3G61800 638 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09740 DUF2043 Uncharacterized conserved protein (DUF2043)
Representative CDS sequence
>Lus10004000 pacid=23153360 polypeptide=Lus10004000 locus=Lus10004000.g ID=Lus10004000.BGIv1.0 annot-version=v1.0
ATGCCTGAAGAACACGGAGGAGGAGGAGGAGGAAGAAGAGATAAGGTGAGGGATTTGATCGAGAAAGCTACCGATTCAACGGCGGCTTACGTAGACCCTC
GTCTCCTCACGGCCATCAAATCGACGGTCCGCTACTCGGATTCCGAGCTCCGGCTCGCCGCTCAAACCCTAATGGAACTCATGAAACGCGATCACTCTCA
GGTGCGTTATCTCTCCCTTTTGATAGTCGACGAACTTTTCATGCGATCGAAGCTATTTAGAAGCATTCTTGTAGAGAATTTGGACCAGCTGTTGACCTTA
AGCGTTGGTTTCAAAAGAAATCTCCCGCTTCCTGCTCCACCTGCTGTTGCCACTGTTCTGCGATCAAAGGCAATTGAATTCTTGGAGAAGTGGAATGAAT
CATTTGGGGTTCACTATCGACAAATCAGACTAGGATTCGACTATCTCAAGAACACTTTGCGCCTGCAGTTTCCTAACATACAGGGGAACATAGCACGCAT
TCGGCAGGAGAGGAGCGAGAGGGAGGCGAGGTCGAAAGAGATTCTGCAGAAAAAGTTTGAAACTCTGAAGGAAAATCTGTCTTCTATGAAAGAAGAGATT
CAGGAGACGATTGATGAGATTAACCAATGCCTGGAAATCGTTACTTGTCAAGAGGACAGGCCCCTCAGCCCTATAGACGAGGAAGATTACGAGGGGGAGT
TTCGATCGTTAGAGCTGCAGCAAATCCGTATCAACTCGTTAAAGGAAGCGGAAAAGGTCCAGGAGGATGCTGAGAATAGAGTGGTTTTCGATACGCTGAG
GGAGCATTACAAACTTCTGGTGACGAAGCATCTAGTTTCTGTGCAGGAATCGATCTCTGTTCTTGTAAGGGTTGAAGTGACGACGAATGCTAGACTCCTG
GATTCTATGCTGAAAGAACTCATCGACTTCCGGAATCAAATCCAATCAGTGAAGAAAAAATGTGCCGAATCAGGCTGTTCTCTCCCTGCCGTTACAAAGA
CTGATAATAAAGAAGAGGAAGAAGAAGATTTTTGGGAGGAAGGTAAAGTTGAGAAATCGACTGGAATTGGGGCCTCCAGCGGATCGTCGAACAAGCCGAA
TGGAAGTTCATCCGAGCTGTCAACTTCCCGTGAGGTGAAAAAACAGTCGCCTGAATCTGGCGACAGTAACTCGAAACGTATCAAGACTGATTCCAACCCT
CTTAAAAGTAAGCTCCTAGAAGAAGCGCCGGTCGTACAACGGGGCTCGTTCTTGGATAATTGGGGTCCGAATCGGGACGTATTGGCGAACCACAGGGGTA
TGGAGATTGATAATCACTGGGGTAGGGTTGACTACGATGCAGTGATTCCAGCAGAAAGAATTGCAGAGCTGAACATGTCTGCTACTGTATACAAAGAAAA
GCAAGTCGAAATCCAGCCATGTCGTGCCCCGTTACGAAAAGGCGGACTTTGTCCAAGGAGGGACTTGAGAGTGTGTCCTTTCCACGGACCTGTCGTTCCC
AGAGACGATGAAGGAAATCCCATCGTTCAAAGCACGGAGTCGACTCCTTCGACAAGTCTCGAGCCATTTCCAAAGTCTGAAAATCCGAACAGCTGCAAAG
ATCTCGACTTTGGAGTCGATCTAGCAAAGCAAGCAGTGAGAAACGTGAGGGATAGAGAGAATGCTGGTGCCAAGAGGAGGAAGATGGAGATGCAGTCGAT
GAAACGTGCTAAGCGTGCTAAGATACGGGAACATAACGAAACGGTTCTGAAAGATGCCGCATCGGCCTCAAGTTCGAGATCTGGATGGGGTGGAGAAGGA
GATGTTGATGCTGCATTGTCATCTAGAAACAAGAAGGAAACCCTTGCATCGATGCTAAGCAAGAAAGTAACGAGGAAGGACAGGCTATCGCAACGACTTT
TGAGTATGAAAGCCAGCGATTCCACCTTCAGGCAGCTTACTCAGGGTGCTGACTCAACGTATCGAGACGCCTTCCCGAATCAGTGGTAG
AA sequence
>Lus10004000 pacid=23153360 polypeptide=Lus10004000 locus=Lus10004000.g ID=Lus10004000.BGIv1.0 annot-version=v1.0
MPEEHGGGGGGRRDKVRDLIEKATDSTAAYVDPRLLTAIKSTVRYSDSELRLAAQTLMELMKRDHSQVRYLSLLIVDELFMRSKLFRSILVENLDQLLTL
SVGFKRNLPLPAPPAVATVLRSKAIEFLEKWNESFGVHYRQIRLGFDYLKNTLRLQFPNIQGNIARIRQERSEREARSKEILQKKFETLKENLSSMKEEI
QETIDEINQCLEIVTCQEDRPLSPIDEEDYEGEFRSLELQQIRINSLKEAEKVQEDAENRVVFDTLREHYKLLVTKHLVSVQESISVLVRVEVTTNARLL
DSMLKELIDFRNQIQSVKKKCAESGCSLPAVTKTDNKEEEEEDFWEEGKVEKSTGIGASSGSSNKPNGSSSELSTSREVKKQSPESGDSNSKRIKTDSNP
LKSKLLEEAPVVQRGSFLDNWGPNRDVLANHRGMEIDNHWGRVDYDAVIPAERIAELNMSATVYKEKQVEIQPCRAPLRKGGLCPRRDLRVCPFHGPVVP
RDDEGNPIVQSTESTPSTSLEPFPKSENPNSCKDLDFGVDLAKQAVRNVRDRENAGAKRRKMEMQSMKRAKRAKIREHNETVLKDAASASSSRSGWGGEG
DVDAALSSRNKKETLASMLSKKVTRKDRLSQRLLSMKASDSTFRQLTQGADSTYRDAFPNQW

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G61800 unknown protein Lus10004000
[exp]
0 1
AT3G17700 ATCNGC20, CNBT1 CYCLIC NUCLEOTIDE-GATED CHANNE... Lus10031891
[exp]
1.0 0.9388
AT1G23780 F-box family protein (.1) Lus10006139
[exp]
3.0 0.9052
AT5G46550 DNA-binding bromodomain-contai... Lus10002784
[exp]
4.9 0.9355
AT5G14420 RGLG2 RING domain ligase2 (.1.2.3.4) Lus10033491
[exp]
5.9 0.9152
AT5G04410 NAC NAC2, ANAC078 Arabidopsis NAC domain contain... Lus10032724
[exp]
6.3 0.9033
AT4G31450 RING/U-box superfamily protein... Lus10020145
[exp]
9.3 0.9255
AT1G34750 Protein phosphatase 2C family ... Lus10020924
[exp]
9.9 0.9007
Lus10040920
[exp]
12.4 0.8902
AT4G13980 HSF AT-HSFA5 HEAT SHOCK TRANSCRIPTION FACTO... Lus10022546
[exp]
12.7 0.8873
AT1G55850 ATCSLE1 cellulose synthase like E1 (.1... Lus10016625
[exp]
13.7 0.9180

Lus10004000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.