Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61790 497 / 1e-178 Protein with RING/U-box and TRAF-like domains (.1) AT4G27880 479 / 1e-171 Protein with RING/U-box and TRAF-like domains (.1) AT3G58040 419 / 3e-148 SINAT2 seven in absentia of Arabidopsis 2 (.1) AT2G41980 416 / 4e-147 Protein with RING/U-box and TRAF-like domains (.1) AT5G53360 368 / 2e-129 TRAF-like superfamily protein (.1) AT3G13672 220 / 3e-71 TRAF-like superfamily protein (.1.2) AT5G37870 89 / 4e-20 Protein with RING/U-box and TRAF-like domains (.1) AT5G37930 85 / 2e-18 Protein with RING/U-box and TRAF-like domains (.1) AT1G66650 80 / 1e-16 Protein with RING/U-box and TRAF-like domains (.1) AT5G37890 76 / 9e-16 Protein with RING/U-box and TRAF-like domains (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030248 [exp] 587 / 0 AT3G61790 514 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10022405 [exp] 483 / 4e-173 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10018110 [exp] 483 / 5e-173 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10002761 [exp] 429 / 1e-151 AT3G61790 462 / 1e-164 Protein with RING/U-box and TRAF-like domains (.1) Lus10016348 [exp] 424 / 2e-149 AT3G61790 459 / 7e-163 Protein with RING/U-box and TRAF-like domains (.1) Lus10013739 [exp] 417 / 2e-147 AT3G58040 493 / 6e-178 seven in absentia of Arabidopsis 2 (.1) Lus10039202 [exp] 416 / 5e-147 AT3G58040 488 / 1e-175 seven in absentia of Arabidopsis 2 (.1) Lus10009111 [exp] 44 / 9e-05 AT5G37930 134 / 5e-38 Protein with RING/U-box and TRAF-like domains (.1) Lus10028535 [exp] 43 / 0.0001 AT5G37930 134 / 7e-38 Protein with RING/U-box and TRAF-like domains (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G171500 [exp] 504 / 0 AT3G61790 558 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.014G099200 [exp] 499 / 2e-179 AT3G61790 551 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.012G015500 [exp] 486 / 3e-174 AT4G27880 542 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.015G013000 [exp] 482 / 1e-172 AT4G27880 546 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.003G198600 [exp] 442 / 2e-157 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.T126006 [exp] 442 / 2e-157 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.016G059700 [exp] 426 / 4e-151 AT3G58040 548 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.006G194100 [exp] 424 / 4e-150 AT3G58040 560 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.001G026200 [exp] 417 / 1e-147 AT3G61790 450 / 2e-160 Protein with RING/U-box and TRAF-like domains (.1) Potri.003G215400 [exp] 404 / 4e-142 AT3G58040 471 / 4e-169 seven in absentia of Arabidopsis 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [flax] [poplar] TRAF PF03145 [flax] [poplar] Sina Seven in absentia protein family
Representative CDS sequence Show only first row Show all	>Lus10004001 pacid=23153353 polypeptide=Lus10004001 locus=Lus10004001.g ID=Lus10004001.BGIv1.0 annot-version=v1.0 ATGGAAGTGGACGGCAGCCAATGCGTGCCGTCAACGGAAGACGAGGAGACCGCCGATCTCCACCGGCGACATCCGTTCCCTTCTTCTTCTTCTTCCAAGC CTCACTTCAAGACCAGCAGCGGCAATTCTCTCACCTCCTCGATTCACACTAGTAGCGTCCACGAGTTGCTTGAATGTCCTGTTTGTACCAACTCCATGTA TCCTCCGATTCACCAGTGCCAGAACGGCCATACGCTCTGTTCGACCTGCAAAGCAATGGTGCACAACAGGTGCCCGACCTGCAGACAAGAGCTCGGAGAT ATCAGATGTCTGGCATTGGAGAAGCTGGCCGAATCGCTCGAGCTTCCCTGCAAGTACATGTACCTCGGATGTGCTGAGATTTTCCCTTACTACAGCAAAC TCCAGCACGAATCACTCTGCAACTTCAGACCCTACAACTGCCCTTACGCCGGTTCCGAGTGTTCCATTGTTGGAGACGTCCCTTTCCTCGTTGCTCATCT GAGGAACGATCACAAGGTGGATATGCATTCCGGGTGCACTTTCAACCACCGTTACGTGAAGTCCAATCCACGCGAAGTTGACAATGCGACTTGGATGTTA ACTGTTTTCCACTGCTTTGGCCAGTACTTCTGCCTCCATGTCGAAGCATTCCAGCTCGAAATGGCGCCAGTCTACATGGCATTCCTCCGATTCATGGGTG ACGAAGCAGAAGCCCGGAACTACAGCTACAGCCTAGAGGTCGGTGGGTACGACCGCAAGCTCATCTGGGAAGGGACTCCCAGAAGCATCAGAGATAGTCA CAGGAAGGTCAGGGACAGCTATGACGGGCTGATTATCCAGAGGAACATGGCGCTTTTCTTCTCAGGCGGCGACAGGAAAGAGCTAAAGCTGCGAGTTACC GGCCGGATATGGAAAGAACAGCACAATCCAGATGGAGGAGGAGCATCGTCCTTGCCAAACACCTCTACTTAA
AA sequence Show only first row Show all	>Lus10004001 pacid=23153353 polypeptide=Lus10004001 locus=Lus10004001.g ID=Lus10004001.BGIv1.0 annot-version=v1.0 MEVDGSQCVPSTEDEETADLHRRHPFPSSSSSKPHFKTSSGNSLTSSIHTSSVHELLECPVCTNSMYPPIHQCQNGHTLCSTCKAMVHNRCPTCRQELGD IRCLALEKLAESLELPCKYMYLGCAEIFPYYSKLQHESLCNFRPYNCPYAGSECSIVGDVPFLVAHLRNDHKVDMHSGCTFNHRYVKSNPREVDNATWML TVFHCFGQYFCLHVEAFQLEMAPVYMAFLRFMGDEAEARNYSYSLEVGGYDRKLIWEGTPRSIRDSHRKVRDSYDGLIIQRNMALFFSGGDRKELKLRVT GRIWKEQHNPDGGGASSLPNTST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61790			Protein with RING/U-box and TR...		Lus10004001 [exp]	0	1
AT3G05500			Rubber elongation factor prote...		Lus10020648 [exp]	1.0	0.9394
AT1G78310			VQ motif-containing protein (....		Lus10036480 [exp]	2.0	0.9378
AT3G05545			RING/U-box superfamily protein...		Lus10020655 [exp]	2.4	0.9295
AT4G34840		ATMTN2, ATMTAN2	ARABIDOPSIS METHYLTHIOADENOSIN...		Lus10042387 [exp]	3.0	0.9225
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Lus10028712 [exp]	3.9	0.9355
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10039164 [exp]	7.7	0.9311
AT4G30010			unknown protein		Lus10001443 [exp]	8.0	0.9142
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10012411 [exp]	8.5	0.9177
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10040095 [exp]	10.1	0.9142
AT5G40490			RNA-binding (RRM/RBD/RNP motif...		Lus10014562 [exp]	11.7	0.9253

Compare expression of checked genes

Lus10004001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.