Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25970 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 328 / 2e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68930 311 / 7e-99 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G21300 305 / 2e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 305 / 3e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 300 / 1e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 298 / 2e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 300 / 3e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 296 / 5e-94 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 291 / 1e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030249 [exp] 849 / 0 AT3G25970 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008967 [exp] 336 / 3e-107 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024936 [exp] 328 / 6e-105 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 338 / 7e-105 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 325 / 2e-103 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014594 [exp] 324 / 2e-103 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 330 / 4e-103 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 320 / 1e-101 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038839 [exp] 301 / 4e-96 AT5G13230 715 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G146800 [exp] 592 / 0 AT3G25970 805 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 328 / 2e-102 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G012500 [exp] 319 / 3e-102 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 318 / 1e-101 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.011G156800 [exp] 318 / 1e-100 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 319 / 2e-100 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G021100 [exp] 309 / 1e-98 AT3G05340 860 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 311 / 1e-97 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G108000 [exp] 305 / 2e-97 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.002G155100 [exp] 308 / 7e-97 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10004002 pacid=23153354 polypeptide=Lus10004002 locus=Lus10004002.g ID=Lus10004002.BGIv1.0 annot-version=v1.0 ATGCTCGCAGCTTATCTTGCCCATGGTAAAAACGAGGCTGCATTCAAGCTTTTCGTGGAAATGCGAGAGGTCGGGTTTGAGCCTGACATATACACTTATA CTAGCATTCTAAGTGCTTGCTCTCAAGAAAAACTTCACCTTGGAAAATGTCTCCATGGGTTGATTATCAGGAAAGGGCTTCCGAATTACGTGCCGATCTG CAATGCATTGGTGGCCATGTACATCTGTTGCAATGATAAAGTAATGCGAGATGCATTGGATGTATTTCGATCAATGGAGTCCAAAGACCCGGTCTCGTGG AATTCTGTATTAACTGGGTTTTCACAGAGTTCGCTTAGTGAAGATGCATTGAAGTTCTGTAAGCATATGAGATCTTCTCTGGTGGAAACTGATCACTATT CTTTCTCAGCTGCGCTTAGATCTTGCTCGGATCTAGCTACTCTGCAATTAGGTAAACAGATTCATGCTTTGACAGTTAAATCCAGTTTGGAGTCGAATGA CTTTGTTGCTAGTGCATTGATTTTTATGTATTTGAAATGCGGAATGCTGGAAGACGCTCGAGAATCATTTGAAGAGACCAGGAAAGACAATGCAATCACT TGGAACTCGATAATCTTCGCATATGCTCAACACGGCCAGCGTCATGCGGCCCTGGAACTCTTCTCCGAAATGAGGGGAAACCGGGTGAAGTTAGACCATA TAACCTTTGTAGCAGTTCTGACGGCATGTAGTCACATTGGATTAGTTGAGCAAGGCCGGAAGTTTCTCAAATCCATGGCATCAGAGTATGGGATTCCACT GCGAATGGAGCACTACGCTTGTGCAGTAGATCTTTTCGGTCGAGCTGGGTATTTAAACGAGGCAAAGGACTTGATCGAGTTGATGCCTTATAAACCGGAT GCCATGGTGTTGAAAACTTTACTGGCTGCTTGCAGAGCGTGTGGTAACATGGAACTAGCAGCTCAAGTGGCGAGCCATCTGCTAGAGCTAGAGCCGGAGG AGCACTGCAGTTACGTCATCTTATCGAACATGTATGCACGTCTTAGGAGATGGGATGAGAAAGCCAGTCTTACCAGGCTGATGAAGGAGAGGAAGGTGAA GAAGGTTCCTGGTTGGAGTTGGGTCCAGGTTAATAATGCGGTTCATTCTTTCATCGCCGATGATCGGTCCAGTCCCCATTTCGAGGAGATATACCTGAGA TTGGATGAACTGGTGCAAGACATGAAGTGGCTGGAGTATGTTAGTACCCTTGGTTCTTCAACTAATGCTTTGGACTTCTGTAACGAATCTCAAGCCGTCT AG
AA sequence Show only first row Show all	>Lus10004002 pacid=23153354 polypeptide=Lus10004002 locus=Lus10004002.g ID=Lus10004002.BGIv1.0 annot-version=v1.0 MLAAYLAHGKNEAAFKLFVEMREVGFEPDIYTYTSILSACSQEKLHLGKCLHGLIIRKGLPNYVPICNALVAMYICCNDKVMRDALDVFRSMESKDPVSW NSVLTGFSQSSLSEDALKFCKHMRSSLVETDHYSFSAALRSCSDLATLQLGKQIHALTVKSSLESNDFVASALIFMYLKCGMLEDARESFEETRKDNAIT WNSIIFAYAQHGQRHAALELFSEMRGNRVKLDHITFVAVLTACSHIGLVEQGRKFLKSMASEYGIPLRMEHYACAVDLFGRAGYLNEAKDLIELMPYKPD AMVLKTLLAACRACGNMELAAQVASHLLELEPEEHCSYVILSNMYARLRRWDEKASLTRLMKERKVKKVPGWSWVQVNNAVHSFIADDRSSPHFEEIYLR LDELVQDMKWLEYVSTLGSSTNALDFCNESQAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10004002 [exp]	0	1
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10040634 [exp]	1.0	0.8706
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10030249 [exp]	3.2	0.8446
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Lus10006123 [exp]	5.9	0.7997
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10022111 [exp]	7.2	0.8074
AT3G49990			unknown protein		Lus10015447 [exp]	7.3	0.8170
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10034715 [exp]	9.5	0.7973
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10004003 [exp]	12.0	0.7733
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	12.7	0.7962
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10016509 [exp]	15.6	0.7842
AT3G49142			Tetratricopeptide repeat (TPR)...		Lus10027562 [exp]	19.0	0.7020

Compare expression of checked genes

Lus10004002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.