Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25970 165 / 4e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02010 116 / 9e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 110 / 8e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 110 / 1e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13880 109 / 2e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G24000 107 / 2e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 105 / 8e-27 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G15130 103 / 5e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 102 / 5e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G28690 102 / 9e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030249 [exp] 303 / 2e-100 AT3G25970 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033713 [exp] 110 / 1e-28 AT1G03540 726 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10028953 [exp] 109 / 3e-28 AT5G47460 541 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 108 / 8e-28 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 107 / 2e-27 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013540 [exp] 105 / 1e-26 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014594 [exp] 105 / 1e-26 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 105 / 1e-26 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028106 [exp] 103 / 4e-26 AT1G25360 916 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G146800 [exp] 207 / 1e-63 AT3G25970 805 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G001050 [exp] 158 / 2e-50 AT3G25970 155 / 5e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 111 / 4e-29 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.005G187800 [exp] 111 / 5e-29 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 110 / 1e-28 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 107 / 1e-27 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 107 / 1e-27 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 105 / 1e-26 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 102 / 6e-26 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G001200 [exp] 102 / 1e-25 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10004003 pacid=23153356 polypeptide=Lus10004003 locus=Lus10004003.g ID=Lus10004003.BGIv1.0 annot-version=v1.0 ATGCCTCAAAGAGACTCTGTCACTTGGAATACTATGATCACCGGGTATGTGAATTTGGGAAACTTGGAAACTGCTTGGGAGGTTCAAATTTCCAAAGCAA GATGTGGGTTCTATCTGGATTTGTACAGCTTCGGCAGCTTGCTAAAGGGTGCTGCTCTTGCTCGCCGGATCGAATCCGGTCAGCAACTGCACTGCCAGAT TGTTAAGATGGGTTTCGACGAGAGTGTTTATGCAGGGAGCGCGCTCCTCGACATGTATGCCAAGTGCGGGAGTGTCAATGATGCTCTTACTGTGTTCGAG GACATGCCTCAACACAATTCGGTATCGTGGAACGCTCTCATTTCTGGGTTTGTGAAGGTTTGTGATAGAGATTCTGCATTTTGGTTGTTTGATTGTATGG AGAAGGAAGGTGTAGACCCTGATGATGGATCATTGTCTCCTCTTCTGACGTTACTTGATGATGAAAGTTCTGTAGCTTAA
AA sequence Show only first row Show all	>Lus10004003 pacid=23153356 polypeptide=Lus10004003 locus=Lus10004003.g ID=Lus10004003.BGIv1.0 annot-version=v1.0 MPQRDSVTWNTMITGYVNLGNLETAWEVQISKARCGFYLDLYSFGSLLKGAALARRIESGQQLHCQIVKMGFDESVYAGSALLDMYAKCGSVNDALTVFE DMPQHNSVSWNALISGFVKVCDRDSAFWLFDCMEKEGVDPDDGSLSPLLTLLDDESSVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10004003 [exp]	0	1
AT1G71930	NAC	VND7, ANAC030	Arabidopsis NAC domain contain...		Lus10033281 [exp]	6.1	0.8194
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030865 [exp]	10.2	0.7931
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10040634 [exp]	11.4	0.7898
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10004002 [exp]	12.0	0.7733
AT1G68470			Exostosin family protein (.1)		Lus10005566 [exp]	15.9	0.7947
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Lus10027533 [exp]	22.2	0.8132
AT5G27110			Tetratricopeptide repeat (TPR)...		Lus10036029 [exp]	22.4	0.7835
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003747 [exp]	24.1	0.7763
AT1G64310			Tetratricopeptide repeat (TPR)...		Lus10028074 [exp]	25.6	0.7844
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Lus10006123 [exp]	26.1	0.7555

Compare expression of checked genes

Lus10004003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.