Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61780 598 / 0 EMB1703 embryo defective 1703 (.1) AT5G28400 260 / 9e-73 unknown protein AT5G28320 221 / 1e-59 unknown protein AT4G15820 82 / 8e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030250 [exp] 151 / 1e-42 AT3G61780 117 / 8e-32 embryo defective 1703 (.1) Lus10034169 [exp] 74 / 4e-13 AT4G15820 204 / 2e-59 unknown protein Lus10043415 [exp] 69 / 1e-11 AT4G15820 199 / 9e-58 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G099100 [exp] 687 / 0 AT3G61780 805 / 0.0 embryo defective 1703 (.1) Potri.008G222000 [exp] 79 / 9e-15 AT4G15820 156 / 7e-42 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004004 pacid=23153366 polypeptide=Lus10004004 locus=Lus10004004.g ID=Lus10004004.BGIv1.0 annot-version=v1.0 ATGGAGCTCCTCAGTCCTCCATTAAATTCCCCGCCTTTTTCAAGTCTCGTCTTCCCAACTTACCGTTCCACAATCCCACACAGTCTCCGCCCACCCTTGT TACTACTATCATCTTCCTCCAGGCGCCTCCGCATCTCAGCCCATTTCAGCCGCCGCTACCGCCGCAGAAACTCCCTCCGGGAAAAGCTCAACGACGAGCA ACAACAGGTGCGTCAGTTGGCCTCTGACCAAAATCCAGGTCTTGTTAATTTCAATGAATCGAGGGAAAGTTTAGGGAACGAATTGAAATCCAATTTGGAG GAGGATTCTGTTATGTTGTCTAGAGTAACGAACTTGGTTGATCAGTATGAGAACGAGCTAGAGCTTGAGCTTGGGGAGGATTCAGCTCAAGTACATTTGA GAATGGAAAAAAGAAGGTTAAATGTGATTCCGGAGGAAAATAGCTCTTCGGCTAAGTTTCTTAGCTCGATTCGGGATGCAGTGGCTCATCCTGAATTTGT TCCGGTACTTTCAAAGGTCGGCAAGCTGGTTTTGCTTAGTTTAGTTGCCGCATGGGCGCTGAAGAGATTGCTGAATTTCGAGGATAAGAAGAAGGAGGAA TACTCGCAGCTGGAGAAGGAAATGATAAGGAGGAAGATTAAACACAGGAAGGAGAAGGAAGCTTTGGAAGGAAGTAAATTTGAACTTGTTGTCATCGAAG AAAGTCTGGAGAAGGCTCGAATAGGAGATTTCGAAAGGCCTGAGCTTGATAAGCAACAGCTTATGAGGAGTATATTCGAATCAAGTGATGGAATGAGTAA ATTGGTGGCTGCAAATGATACATCTGCTGCAGAAGTTGATCCGAGAATTCGGGAAATCCAAGGTATGGCGAGGAAAGCTCGAGAAACCGAGAGGGGAGAA CGTTCAGTCGAGGAAGGAAGCCAAGTGTTTGATGTAGAGTCGTTCGATGTTCATGACTTGGAATCATCAGATGAACCGGATGTAGAGGAGAGCAAGGGAA TTCAAGACTCCTTGATCTTACAAGGGGATGATGTTTTGGAGAATGCACAAGGTATGATGACCGTAGAACCGCCTTATTATCCGAAGATTGAGGAAGGAGA AGATACATCTGAAGTTACAGAATCATTTTCCAAGAGTGAGTCACCTTTATCAAGCGAATCAGTTTTACCAAAACCAAGGGTTATAACGTCAGTGAAAGAA GCTAGAGAGTTCCTTTCTAAGAGAAAGTATGAAGACGTTCGGAAGTGCCAGGCTGATTCTTTGAGCATGTCTTGTGATGATAACGGCGATCCATTTACGT TTAACGGAAAAGAAGGCATTGTTTCAGAAGAATTGAATGTCAACGGAGCATCGAATTCGTTACCTTCTGATACTTTCCAGAGTTCTTCCAAGGACAGTGA AGCTTTTTTAAGCAAGGAGGATCATTCCCAAGTCTCCGTGGAAGAGGTTGGAATAGTTAAAGCTGAAATACGCTCCGATTCCTTAAATGACATTGACAAT GGCAGTGATCGATCCCTTGGTAGTAAAAAGCCTGAAGAAATGCCGAAGTGGCTGGAGGAACATAGTAATGAATTAGAGCCGATATTTAAGAAGATTGGAG ACGGATTTAAAGATAATTTCAAGATTGCAAGAGAAACAGTGAATGAGAACTCGAATAGTTATAGAAGTCTTGAGTCGTTGAAGCTCGAGTTCCAGGATGA TGATGGTGAAGTTGAATGGATGAGAGATGAATGCCTGAGAGATATAGTGTTTCGAGTTCGAGACAACGAGTTGTGTGGTCGCGATCCGTTTCACATGATG GAAGCTGAAGACAAGCGTAGATTTTTCGAAGGTCTCGAGAAGAAAGTCGAGAGAGAGAACGAAAAACTCCGTAAAGTGCACGAGTATCTGCACGCAAACA TCGAAAATCTTGATTATGGAGCAGATGGCATCAGTCTGTACGACACACCAGAAAAGTTCATGCCGCGTTGGAAAGGTCCCTCGTTCGAAAGGAGCCCCGA GTTTCTTGATAATGTAATACAAAGGGATGCCACGAAGAATAACAAACTCCATATAGACGCAGAATCGAAGTTGGCCAACAGTGCCAACCTTTCTTCAGCA AACCATGTATTGAGAAAGCACATCAACAAAAAGGATCCAAAAGTATCCAAGGTAGTTATAGAAGGCAGCGATGGATCCGCCAGACCTGGCAAAAAAACCG GTAAGGAGTTTTGGCAACACACGAAGAAATGGTCGAGGGGATTCCTGGATTCTTACAGCGCAGAGGCAGATCCGGAAGTGAAATCTGCAATGAAGGATAT CGGGAAAGACCTGGATAAATGGATCACTGAGGAAGAAGTTCAGGAAGCGGCAGATATGATGAGCAAATTGCCAGAGAGGAAAAAGGAGTTTGTGGAGAAG AAGATGAGTAAGCTGAAAAGAGAAATGGAACTGTTTGGACCTCAAGCTGTTGTTAGCAAGTACCGGGAGTACGTGGAGGAGAAGGAAGAGGATTTCTTGT GGTGGCTTGATCTTCCACATGTGCTGTGCATTGAGCTATACACAACTGAGAACGGAGAACGAAGAACTGGCTTTTATTCATTGGAGATGGCTGCAGATCT CGAGTTGGAACCTAAACCTTATCACGTTATTGCTTTCGAGGATCTTCGCGATTGCAGGAACCTCTGTTACATAATTCAGGCACACTTGGAAATGCTCAGA ACCGGCCACGCTTTCGTCGTTCCTAGACCCCCAAAGGATGCCTTCAGAGAAGCCAAAGCAAACGGGTTCAGTGTTACTGTAATCAGGAAAGGGCAACTGC AGATGGACATAGACCAGCCATTGGAGGTGGTGGAGGAAGAGATCGCGGAGATCGGAAGCAAAATCTACCACGATAAACTGATGCAGGAGCGCAGCGTTGA TGTGAACTCGCTTATGAAGGGCATTCTCGGAGTTAATGACCAGAGCACCAAAACTTTGAGGAAGCGAGCTAAGAAGAGGAAATCGAATAAGCCAACCGGG AAGTAA
AA sequence Show only first row Show all	>Lus10004004 pacid=23153366 polypeptide=Lus10004004 locus=Lus10004004.g ID=Lus10004004.BGIv1.0 annot-version=v1.0 MELLSPPLNSPPFSSLVFPTYRSTIPHSLRPPLLLLSSSSRRLRISAHFSRRYRRRNSLREKLNDEQQQVRQLASDQNPGLVNFNESRESLGNELKSNLE EDSVMLSRVTNLVDQYENELELELGEDSAQVHLRMEKRRLNVIPEENSSSAKFLSSIRDAVAHPEFVPVLSKVGKLVLLSLVAAWALKRLLNFEDKKKEE YSQLEKEMIRRKIKHRKEKEALEGSKFELVVIEESLEKARIGDFERPELDKQQLMRSIFESSDGMSKLVAANDTSAAEVDPRIREIQGMARKARETERGE RSVEEGSQVFDVESFDVHDLESSDEPDVEESKGIQDSLILQGDDVLENAQGMMTVEPPYYPKIEEGEDTSEVTESFSKSESPLSSESVLPKPRVITSVKE AREFLSKRKYEDVRKCQADSLSMSCDDNGDPFTFNGKEGIVSEELNVNGASNSLPSDTFQSSSKDSEAFLSKEDHSQVSVEEVGIVKAEIRSDSLNDIDN GSDRSLGSKKPEEMPKWLEEHSNELEPIFKKIGDGFKDNFKIARETVNENSNSYRSLESLKLEFQDDDGEVEWMRDECLRDIVFRVRDNELCGRDPFHMM EAEDKRRFFEGLEKKVERENEKLRKVHEYLHANIENLDYGADGISLYDTPEKFMPRWKGPSFERSPEFLDNVIQRDATKNNKLHIDAESKLANSANLSSA NHVLRKHINKKDPKVSKVVIEGSDGSARPGKKTGKEFWQHTKKWSRGFLDSYSAEADPEVKSAMKDIGKDLDKWITEEEVQEAADMMSKLPERKKEFVEK KMSKLKREMELFGPQAVVSKYREYVEEKEEDFLWWLDLPHVLCIELYTTENGERRTGFYSLEMAADLELEPKPYHVIAFEDLRDCRNLCYIIQAHLEMLR TGHAFVVPRPPKDAFREAKANGFSVTVIRKGQLQMDIDQPLEVVEEEIAEIGSKIYHDKLMQERSVDVNSLMKGILGVNDQSTKTLRKRAKKRKSNKPTG K

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61780		EMB1703	embryo defective 1703 (.1)		Lus10004004 [exp]	0	1
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009012 [exp]	1.4	0.9225
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Lus10031272 [exp]	2.0	0.9149
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001921 [exp]	3.0	0.9032
AT3G02060			DEAD/DEAH box helicase, putati...		Lus10012587 [exp]	7.7	0.8747
AT3G58830			haloacid dehalogenase (HAD) su...		Lus10020774 [exp]	8.1	0.8445
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10024857 [exp]	8.5	0.8701
					Lus10004594 [exp]	9.0	0.8226
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Lus10024613 [exp]	9.6	0.8281
AT3G58830			haloacid dehalogenase (HAD) su...		Lus10007350 [exp]	9.7	0.8075
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Lus10032251 [exp]	9.7	0.8378

Compare expression of checked genes

Lus10004004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.