Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46500 483 / 1e-169 UBDKGAMMA4, ATPI4KGAMMA4 ,PI4K GAMMA 4 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) AT1G64460 432 / 9e-154 Protein kinase superfamily protein (.1) AT5G24240 428 / 6e-148 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) AT2G03890 211 / 3e-63 UBDKGAMMA7, ATPI4KGAMMA7 ,PI4K GAMMA 7 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) AT1G13640 208 / 2e-62 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT1G26270 204 / 7e-61 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT2G40850 200 / 9e-60 ATPI4KGAMMA1 ,PI4K GAMMA 1 phosphoinositide 4-kinase gamma 1 (.1) AT3G56600 194 / 2e-57 Protein kinase superfamily protein (.1.2) AT1G27570 104 / 1e-24 phosphatidylinositol 3- and 4-kinase family protein (.1.2) AT3G43950 59 / 4e-10 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030251 [exp] 627 / 0 AT2G46500 484 / 3e-170 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10018104 [exp] 471 / 5e-165 AT5G24240 689 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10022411 [exp] 471 / 7e-165 AT5G24240 731 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10003190 [exp] 459 / 4e-161 AT2G46500 587 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10001817 [exp] 459 / 1e-159 AT2G46500 665 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10019197 [exp] 209 / 3e-62 AT2G03890 873 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10036834 [exp] 207 / 2e-61 AT2G03890 874 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10005095 [exp] 193 / 2e-56 AT2G03890 700 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G099000 [exp] 510 / 4e-180 AT2G46500 784 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.012G014600 [exp] 491 / 1e-172 AT5G24240 767 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.001G090300 [exp] 480 / 3e-168 AT2G46500 699 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.015G013600 [exp] 460 / 6e-160 AT5G24240 747 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.010G137400 [exp] 214 / 3e-64 AT2G03890 917 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.008G112200 [exp] 213 / 6e-64 AT2G03890 866 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.006G031600 [exp] 204 / 3e-61 AT2G40850 489 / 2e-168 phosphoinositide 4-kinase gamma 1 (.1) Potri.017G101500 [exp] 183 / 4e-53 AT2G03890 737 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.002G171400 [exp] 86 / 5e-21 AT1G64460 86 / 6e-22 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00454 [flax] [poplar] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
Representative CDS sequence Show only first row Show all	>Lus10004005 pacid=23153364 polypeptide=Lus10004005 locus=Lus10004005.g ID=Lus10004005.BGIv1.0 annot-version=v1.0 ATGTCGGCTGCTGGGAATGATCCAATCAAGTCTATGGAAGGTACAGGAGGAGCTTATTTCATGCAGGATTCTCTTGGGCAGAAGTTTGTTTCGGTTTTTA AACCGATCGACGAGGAGCCTCTAGCTATCAACAACCCTCAGAAGTTGCCTTCTTCGCCTAATGGCGAGGGACTGAAGAAAGGTACGGTAGTCGGAGAAGG TGCCCTGAGGGAAGTTGCGGCATACATTTTGGATCATCCAAAGGGAGGAAAGAGATCGTTATTCGGGAACGATGAACACGGCTTTGCTGGTGTTCCGCCG ACTGTTATGGTGAAGTGTTTGCATAGAGGATTTCACCATCCGGAGGGTGTGAACGTTAAGATAGGTTCTTTGCAGATGTTTATGAAGAGCGACGGTAGTT GTGAGGATATTGGACCTTGTGGTTTTCCGATCGAGGAAGTTCATAAGATTGCGGTTTTCGATATAAGGCTGGCTAATGCGGATAGACATGGTGGGAATCT TCTGTTCCGAAAAGATGCGGAATCAGGGAGGACTCTGTTAATTCCGATTGATCATGGATACTGCTTGCCTGAAAGTTTCGAAGACTGCACGTTCGAGTGG CTCTACTGGCCGCAAGCTCGTCAGCCTTTCGACACAGAGACTGTCGACTACATAAGATCGCTGGACGCAGAAGACGATATCGCCCTTCTCCAGTTCCACG GCTGGGATGTGCCGGCCGGTTGTGCTCGGACACTTAGAATCTCCACCATGCTTCTGAAGAAAGGAGTCGAGAAGGGGCTGACTCCCTTCGACATCGGGAA CATCATGTGCAGGGAGAGGTTGAACAAGGAATCGGCAATCGAGGAGATTGTTTGCGAAGCAGAAGACTCGGTGCTTCCAGGGACGAGCGAGGGAGGTTTG TTTGAGGCCATATCGGAGATCATGGATCGTCGTCTCGATGAGATTGCCATGACGAAGTAG
AA sequence Show only first row Show all	>Lus10004005 pacid=23153364 polypeptide=Lus10004005 locus=Lus10004005.g ID=Lus10004005.BGIv1.0 annot-version=v1.0 MSAAGNDPIKSMEGTGGAYFMQDSLGQKFVSVFKPIDEEPLAINNPQKLPSSPNGEGLKKGTVVGEGALREVAAYILDHPKGGKRSLFGNDEHGFAGVPP TVMVKCLHRGFHHPEGVNVKIGSLQMFMKSDGSCEDIGPCGFPIEEVHKIAVFDIRLANADRHGGNLLFRKDAESGRTLLIPIDHGYCLPESFEDCTFEW LYWPQARQPFDTETVDYIRSLDAEDDIALLQFHGWDVPAGCARTLRISTMLLKKGVEKGLTPFDIGNIMCRERLNKESAIEEIVCEAEDSVLPGTSEGGL FEAISEIMDRRLDEIAMTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10004005 [exp]	0	1
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009035 [exp]	3.5	0.7973
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Lus10004701 [exp]	5.5	0.7262
AT5G64920		CIP8	COP1-interacting protein 8 (.1...		Lus10031422 [exp]	5.8	0.8006
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10030251 [exp]	5.9	0.7906
AT1G47710			Serine protease inhibitor (SER...		Lus10032754 [exp]	7.1	0.7693
AT2G37975			Yos1-like protein (.1)		Lus10000226 [exp]	8.0	0.7973
AT5G03990			unknown protein		Lus10016362 [exp]	8.2	0.8041
AT5G14740		BETACA2, CA18, ...	CARBONIC ANHYDRASE 18, BETA CA...		Lus10030874 [exp]	11.5	0.7411
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009674 [exp]	12.2	0.7788
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10005578 [exp]	17.0	0.7455

Compare expression of checked genes

Lus10004005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.