Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24270 203 / 2e-66 ATSOS3, CBL4, SOS3 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) AT4G26570 176 / 6e-56 ATCBL3 calcineurin B-like 3 (.1.2) AT4G17615 173 / 2e-55 ATCBL1, SCABP5, CBL1 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) AT5G55990 172 / 2e-54 ATCBL2, CBL2 calcineurin B-like protein 2 (.1) AT5G47100 172 / 3e-54 ATCBL9, CBL9 calcineurin B-like protein 9 (.1) AT1G64480 172 / 3e-54 CBL8 calcineurin B-like protein 8 (.1) AT4G33000 170 / 3e-53 SCABP8, ATCBL10, CBL10 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) AT4G26560 157 / 1e-48 CBL7 calcineurin B-like protein 7 (.1) AT4G01420 152 / 9e-47 CBL5 calcineurin B-like protein 5 (.1) AT4G16350 151 / 4e-46 SCABP2, CBL6 SOS3-LIKE CALCIUM BINDING PROTEIN 2, calcineurin B-like protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030252 [exp] 301 / 2e-105 AT5G24270 269 / 4e-92 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10018108 [exp] 221 / 1e-73 AT5G24270 328 / 1e-115 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10022407 [exp] 220 / 4e-73 AT5G24270 331 / 1e-116 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10001816 [exp] 197 / 2e-64 AT1G64480 271 / 3e-93 calcineurin B-like protein 8 (.1) Lus10003191 [exp] 194 / 6e-63 AT1G64480 264 / 2e-90 calcineurin B-like protein 8 (.1) Lus10023069 [exp] 186 / 8e-60 AT1G64480 263 / 6e-90 calcineurin B-like protein 8 (.1) Lus10032400 [exp] 187 / 6e-58 AT1G64480 263 / 3e-87 calcineurin B-like protein 8 (.1) Lus10011028 [exp] 177 / 3e-56 AT4G17615 359 / 5e-128 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) Lus10015630 [exp] 164 / 7e-51 AT4G33000 322 / 3e-112 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G015100 [exp] 214 / 4e-71 AT5G24270 333 / 2e-117 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.015G013200 [exp] 214 / 5e-71 AT5G24270 291 / 8e-101 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.015G013100 [exp] 213 / 2e-70 AT5G24270 324 / 6e-114 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.001G090200 [exp] 190 / 1e-61 AT1G64480 280 / 2e-96 calcineurin B-like protein 8 (.1) Potri.011G094900 [exp] 177 / 2e-56 AT4G26570 408 / 6e-147 calcineurin B-like 3 (.1.2) Potri.016G003500 [exp] 177 / 3e-56 AT5G55990 420 / 2e-151 calcineurin B-like protein 2 (.1) Potri.001G371700 [exp] 177 / 4e-56 AT5G55990 418 / 9e-151 calcineurin B-like protein 2 (.1) Potri.006G002900 [exp] 177 / 5e-56 AT5G55990 414 / 5e-149 calcineurin B-like protein 2 (.1) Potri.001G150200 [exp] 175 / 1e-55 AT5G47100 367 / 6e-131 calcineurin B-like protein 9 (.1) Potri.003G141400 [exp] 173 / 1e-54 AT5G24270 238 / 8e-80 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10004006 pacid=23153359 polypeptide=Lus10004006 locus=Lus10004006.g ID=Lus10004006.BGIv1.0 annot-version=v1.0 ATGACAAGACAAGGAGAATCAAAATCTCTGCAAACATTGCAGAAGGAAGACTTCCAATTTGCGCTTTTCAGAACTACAAAGAAACATAATCTCTTTGCAG ACAGGGTATTTGATCTATTTGATGTTAACGGCGATGGGCATATCGAATTCGGAGAGTTTGTTGACTCATTGAGTGTGTTTCACCCCAGAACTCCCGCCGC TGTCAAAATCAAGTGTGCATTCAAGCTGTATGATTTAAGGCATACTGGTTACATCGAGCGAGAAGAGTTGAAAGATATGGTAGTGGCACTGCTGACTGAA TCTGACCTGGTTCTCTCTGAAGATGTCGTTGAACAAATCGTGGACAAGGTACTGAATTTTGAGCCATTGAAAATCGCATTGCCAGCGACATGCGATGATG CGGATTCGAAAGGTGATGGAAGGATTGATCAGGAAGAGTGGGAAGACTACGTGGAAAAGAACCCTTCATTGCTGAAGAACATGACACTTCCTTACCTAAT GTTAACACTTAAAAACCAGAAGGACATTACCTTGTCATTTCCAAGCTTTGTAATGAGAACTGAAGCTGAAGAATCGGAACTATAG
AA sequence Show only first row Show all	>Lus10004006 pacid=23153359 polypeptide=Lus10004006 locus=Lus10004006.g ID=Lus10004006.BGIv1.0 annot-version=v1.0 MTRQGESKSLQTLQKEDFQFALFRTTKKHNLFADRVFDLFDVNGDGHIEFGEFVDSLSVFHPRTPAAVKIKCAFKLYDLRHTGYIEREELKDMVVALLTE SDLVLSEDVVEQIVDKVLNFEPLKIALPATCDDADSKGDGRIDQEEWEDYVEKNPSLLKNMTLPYLMLTLKNQKDITLSFPSFVMRTEAEESEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10004006 [exp]	0	1
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029113 [exp]	2.6	0.9298
AT4G27120			unknown protein		Lus10011161 [exp]	4.7	0.9288
AT2G42130			Plastid-lipid associated prote...		Lus10016263 [exp]	5.7	0.9166
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029112 [exp]	12.6	0.9186
AT1G14740			Protein of unknown function (D...		Lus10030769 [exp]	16.1	0.9157
AT4G19510			Disease resistance protein (TI...		Lus10002250 [exp]	16.7	0.9049
AT4G23050			PAS domain-containing protein ...		Lus10017844 [exp]	20.8	0.8991
AT1G01750		ADF11	actin depolymerizing factor 11...		Lus10008489 [exp]	23.4	0.8935
					Lus10035267 [exp]	23.9	0.8579
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10009916 [exp]	24.5	0.9032

Compare expression of checked genes

Lus10004006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.