Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61760 1072 / 0 ADL1B DYNAMIN-like 1B (.1) AT5G42080 1066 / 0 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT3G60190 870 / 0 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT1G14830 857 / 0 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT2G44590 807 / 0 ADL1D DYNAMIN-like 1D (.1.2.3) AT2G14120 271 / 5e-81 DRP3B dynamin related protein (.1.2.3) AT4G33650 269 / 6e-80 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT1G59610 209 / 6e-58 DRP2B, CF1, ADL3 Dynamin related protein 2B, dynamin-like 3 (.1) AT1G10290 209 / 7e-58 DRP2A, ADL6 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1) AT1G60530 117 / 7e-29 DRP4A Dynamin related protein 4A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030255 [exp] 1172 / 0 AT3G61760 1052 / 0.0 DYNAMIN-like 1B (.1) Lus10003873 [exp] 1041 / 0 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10001820 [exp] 1025 / 0 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10023073 [exp] 1024 / 0 AT5G42080 1106 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10019170 [exp] 869 / 0 AT1G14830 1131 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10019506 [exp] 844 / 0 AT3G60190 1060 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10040117 [exp] 823 / 0 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10029001 [exp] 812 / 0 AT1G14830 1061 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10014041 [exp] 264 / 4e-78 AT4G33650 1081 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G171200 [exp] 1118 / 0 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.001G090600 [exp] 1070 / 0 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.003G141000 [exp] 1065 / 0 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.001G147500 [exp] 880 / 0 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.002G135100 [exp] 876 / 0 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.010G105900 [exp] 875 / 0 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Potri.014G043600 [exp] 869 / 0 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.017G041800 [exp] 283 / 4e-85 AT4G33650 1070 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.007G118300 [exp] 283 / 8e-85 AT4G33650 1067 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.012G125300 [exp] 191 / 3e-56 AT2G14120 365 / 3e-121 dynamin related protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01031 [flax] [poplar] Dynamin_M Dynamin central region CL0023 [flax] [poplar] P-loop_NTPase PF00350 [flax] [poplar] Dynamin_N Dynamin family CL0023 [flax] [poplar] PF02212 [flax] [poplar] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Lus10004007 pacid=23153347 polypeptide=Lus10004007 locus=Lus10004007.g ID=Lus10004007.BGIv1.0 annot-version=v1.0 ATGGACAATCTGATATCCCTGGTGAACAAGATACAAAGAGCTTGTACGGCTTTAGGCGACCATGGCGAAGAGAGTGCATTGCCTACTCTCTGGGAAGCTC TTCCCGCCATCGCCGTCGTCGGCGGCCAGAGTTCTGGAAAGTCTTCTGTGTTGGAGAGCATAGTTGGAAAGGATTTTCTACCTCGTGGAGCAGGGATTGT TACACGGAGACCTCTTGTGTTGCAGCTTCATAAGATTGATGAAACAAGAGAATATGCAGAGTTTATGCACCTCCCAAGAAAGAGATTCACCGAATTCGCT GCGGTGAGGCAGGAGATTTCCGATGAGACTGATCGTGAGACTGGACGCTCCAAGCAAATCTCTACGGTTCCAATCCACCTTAGCATTTTCTCTCCAAACG TGGTGAACTTGACATTGGTTGATCTTCCTGGACTCACGAAAGTGGCTGTAGAGGGTCAACATGAGAGTATTGTGCAGGACATAGAGAACATGGTCAGGTC ATATATAGAAAAGCCAAACTGTATAATCTTAGCAATTTCTCCTGCTAATCAAGATCTTGCTACGTCTGATGCAATAAAGATTTCTCGTGAAGTTGACCCT AAAGGCGAGAGGACATTTGGAGTTTTGACCAAGATTGATCTTATGGACCAAGGTACTAATGCAGTTGATATCCTGGAAGGCAGATCATATAAGCTTCAGT TTCCGTGGATTGGAGTCGTTAATCGTTCTCAAGCTGATATCAACAACAGTGTGGACATGATAGCAGCCCGGCGCAGAGAGCGCGAATATTTTCAAAGCAG CCAGGAATATAGACATCTAGCTCAAAGGATGGGATCTGAGCATTTAGGAAAGATGATGTCAAAGCATCTAGAACAAGTCATCAAGTCTCGAATTCCTGGT CTCCAGTCCCTCATCAGTAAAACCATTATCGAGCTAGAAACAGAGTTAAGCCGCCTTGGAAGACCTGTTGCTACTGATGCTGGTGGGAAGCTATACATGG TCATGGAAATTTGCCGAGCTTTTGATCAAATATTCAAAGAACATCTTGATGGCGTGCGTTCAGGTGGTGAAAAAATCTACCAAGTATTTGATAATCAACT ACCGGCTGCTTTGAAGAGACTGCAGTTCGACAAACACTTATCGCTCGATAATGTGCGAAAACTCATCACAGAAGCTGATGGTTACCAGCCACATCTGATA GCTCCTGAGCAAGGGTATCGCCGTCTTATTGAGTCCACCTTGATAACCATCAAAGTTCCTGCTGAAGCAGCTGTCGATGCGGTCCATGCTATACTGAAAG ACATGGTTCATAAGTCTATCAATGAAACACAGGAACTGAAGCAATATCCTACATTAAAAGTGGAAGTAACCAACGCTGCAGTGGAGTCTCTAGAAAGGAT GAAGGAAGAAAGCAGGCGAGCAACTATACAGCTAGTTGACATGGAATGCTGTTACTTGACAGTTGAGTTCTTCCGTAAGCTGCCACAGGACATCGAGAAG GGCGGGAATCCAACGCACTCGATCTTCGATCGATACAACGACGCGTACCTCAGACGAGTTGGGAGCAACGTATTGCAATATGTCAACTTGGTGTGTGCAA GCTTGAGGAACTCGATTCCGAAGTCAGTAGTGTATTGCCAAGTAAGGGAAGCCAAAAGAAGCTTGCTTGATCATTTCTTCGCGGAGTTGGGCAAGAGGGA GACGAGACAGATGAGCTCATTACTGGATGAAGATCCAGCAGTGATGCAGCGGCGAACCAACCTAGCCAAGAGGCTGGAACTGTACAGAAGTGCTCAAGTT GAGATCGATGCAGTTGCTTGGTCCAGATAA
AA sequence Show only first row Show all	>Lus10004007 pacid=23153347 polypeptide=Lus10004007 locus=Lus10004007.g ID=Lus10004007.BGIv1.0 annot-version=v1.0 MDNLISLVNKIQRACTALGDHGEESALPTLWEALPAIAVVGGQSSGKSSVLESIVGKDFLPRGAGIVTRRPLVLQLHKIDETREYAEFMHLPRKRFTEFA AVRQEISDETDRETGRSKQISTVPIHLSIFSPNVVNLTLVDLPGLTKVAVEGQHESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDP KGERTFGVLTKIDLMDQGTNAVDILEGRSYKLQFPWIGVVNRSQADINNSVDMIAARRREREYFQSSQEYRHLAQRMGSEHLGKMMSKHLEQVIKSRIPG LQSLISKTIIELETELSRLGRPVATDAGGKLYMVMEICRAFDQIFKEHLDGVRSGGEKIYQVFDNQLPAALKRLQFDKHLSLDNVRKLITEADGYQPHLI APEQGYRRLIESTLITIKVPAEAAVDAVHAILKDMVHKSINETQELKQYPTLKVEVTNAAVESLERMKEESRRATIQLVDMECCYLTVEFFRKLPQDIEK GGNPTHSIFDRYNDAYLRRVGSNVLQYVNLVCASLRNSIPKSVVYCQVREAKRSLLDHFFAELGKRETRQMSSLLDEDPAVMQRRTNLAKRLELYRSAQV EIDAVAWSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61760		ADL1B	DYNAMIN-like 1B (.1)		Lus10004007 [exp]	0	1
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10021725 [exp]	5.5	0.8928
AT1G19715			Mannose-binding lectin superfa...		Lus10024290 [exp]	5.9	0.9124
AT1G09812			unknown protein		Lus10035787 [exp]	13.0	0.8778
AT1G52700			alpha/beta-Hydrolases superfam...		Lus10014347 [exp]	13.4	0.8546
AT2G23790			Protein of unknown function (D...		Lus10016305 [exp]	13.7	0.8710
AT3G61760		ADL1B	DYNAMIN-like 1B (.1)		Lus10030255 [exp]	16.1	0.8089
AT5G67550			unknown protein		Lus10011544 [exp]	16.4	0.8795
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10032580 [exp]	18.2	0.8347
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005017 [exp]	18.3	0.8702
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10038280 [exp]	18.5	0.8537

Compare expression of checked genes

Lus10004007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.