Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53390 449 / 4e-154 O-acyltransferase (WSD1-like) family protein (.1) AT3G49200 436 / 6e-149 O-acyltransferase (WSD1-like) family protein (.1) AT3G49210 436 / 1e-148 O-acyltransferase (WSD1-like) family protein (.1) AT3G49190 418 / 1e-141 O-acyltransferase (WSD1-like) family protein (.1) AT5G53380 374 / 7e-125 O-acyltransferase (WSD1-like) family protein (.1) AT5G12420 374 / 7e-125 O-acyltransferase (WSD1-like) family protein (.1) AT5G16350 369 / 5e-123 O-acyltransferase (WSD1-like) family protein (.1) AT5G22490 358 / 1e-118 O-acyltransferase (WSD1-like) family protein (.1) AT1G72110 350 / 1e-115 O-acyltransferase (WSD1-like) family protein (.1), O-acyltransferase (WSD1-like) family protein (.2) AT2G38995 341 / 5e-112 O-acyltransferase (WSD1-like) family protein (.1), O-acyltransferase (WSD1-like) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009718 [exp] 465 / 5e-160 AT3G49200 532 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Lus10030257 [exp] 368 / 2e-125 AT5G53390 202 / 2e-61 O-acyltransferase (WSD1-like) family protein (.1) Lus10027887 [exp] 201 / 3e-58 AT5G53390 262 / 5e-82 O-acyltransferase (WSD1-like) family protein (.1) Lus10017718 [exp] 157 / 6e-42 AT3G49190 187 / 4e-53 O-acyltransferase (WSD1-like) family protein (.1) Lus10033678 [exp] 146 / 5e-38 AT3G49190 166 / 2e-45 O-acyltransferase (WSD1-like) family protein (.1) Lus10017717 [exp] 144 / 3e-37 AT3G49190 156 / 1e-41 O-acyltransferase (WSD1-like) family protein (.1) Lus10014075 [exp] 134 / 5e-36 AT5G53390 156 / 5e-45 O-acyltransferase (WSD1-like) family protein (.1) Lus10017721 [exp] 139 / 1e-35 AT3G49210 170 / 5e-47 O-acyltransferase (WSD1-like) family protein (.1) Lus10019840 [exp] 129 / 2e-34 AT3G49200 155 / 2e-44 O-acyltransferase (WSD1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G014200 [exp] 476 / 4e-164 AT5G53390 559 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070900 [exp] 437 / 1e-149 AT5G53390 446 / 2e-153 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070975 [exp] 427 / 2e-145 AT5G53390 427 / 4e-146 O-acyltransferase (WSD1-like) family protein (.1) Potri.001G304600 [exp] 234 / 7e-71 AT3G49200 263 / 4e-82 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010500 [exp] 188 / 1e-53 AT3G49190 216 / 2e-64 O-acyltransferase (WSD1-like) family protein (.1) Potri.007G139600 [exp] 166 / 1e-45 AT3G49190 197 / 4e-57 O-acyltransferase (WSD1-like) family protein (.1) Potri.013G085101 [exp] 162 / 5e-44 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010300 [exp] 157 / 4e-42 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010700 [exp] 147 / 1e-38 AT3G49190 196 / 1e-56 O-acyltransferase (WSD1-like) family protein (.1) Potri.007G139501 [exp] 65 / 1e-11 AT5G53390 59 / 4e-10 O-acyltransferase (WSD1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF03007 [flax] [poplar] WES_acyltransf Wax ester synthase-like Acyl-CoA acyltransferase domain CL0149 [flax] [poplar] PF06974 [flax] [poplar] WS_DGAT_C WS/DGAT C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004008 pacid=23153375 polypeptide=Lus10004008 locus=Lus10004008.g ID=Lus10004008.BGIv1.0 annot-version=v1.0 ATGGAGGAAGTGGGGCTGAGATGGAGAAGAGGCACGAAACCGTCGACTCTGAAACCCATTGATGTTACTAGAAAGGCAGCTGGCGAAGAAGAAGAGGAAG AAGAGTTGTTAAGTCCGGCATCAAGGCTGTTCCACGAGCCAAACTTCAACGTCTACGTAGTAGCTATACTGGGTTGCAAGACCAAGATTGACCCGGATCT CGTCGTTTCCAAGTTGCCCCACACTTTGCTCAAGCACCCTCGCTTCTCCAGTCTCCAGGTTGTAGTCAACGACGGCAATGAAAACAAGGAGAAACACATG AAGTGGGTCCCAACAACCGTCAACCTCAAAAACCACGTCATCGTCCCAGACGTTGACCAGTCAACCTTCCCCACCTCCGCCGCCGGCCAGAAGTTCGTCG AAGACTACATCTCGGACCTCACCAAAACAACAATCGACGGCTCCAAGCAGCCGCTGTGGGACCTACACCTCCTGAACGTGAAAACGGCGCCGGATTCGGA AGCCGTCGGAGTTTTCAGGATCCACCACTCCTTAGGCGACGGCACTTCCCTGATGTCTCTGCTCTTAGCCTGCACCCGCCAGATTTCCGACCCGGAATCT TTACCCACCATCCCGACCCGGAAGCCCAAGAAGCAGGAGGGCGAGGATTTTAACGACGGCGGCGTTTGGAGGAGGGTGACGTGGAGGATGGTGGTGAGAG TTTGGATGATGGCTGTGCTGATGTGGAACACAGCGGTTGATGTGCTGGCGTTTTTTTTAACGGCGATCGGATTGAAGACGGATACGGTGACGCCGTTAAT GGGGCCTCATGGGGTTGAGCATTTGCCCAGGAGGTTTGTTTGGAGGACCGTTAGTTTGGATGACTTCAAGTTCGTTAAGAATGCTATGGACGCCACAATA AATGATGTTGCTCTTGGAGCTACCCAGGCTGGATTGTCTCGCTATCTCAACAGAAAATTTGGGGGGAACGACGATGATGGAGAAACAAAGAATAGTCTTC TTTCGAAAGGAAGAATTTGCATCCGATCAACTTTACTCGTTAATTTAAGGCCTGGTCCTGGAATTCAGGCATTAGCGGATATGATGGAGAAAGATACGGA AGTGAAGTGGGGGAATTGGATAGGATTCATATTGCTTCCTTTCACAGTAGGGATAAGAAACGACCCATTAGACTATGTCCGTGAAGCCAAAGCTGTTGTA GACCGAAAAAAACGTTCACTCGAAGCTCTCTTCACTTTCTCGATTGCCGAAATAGTCCTCAAGCTTCTTGGCATCAAAAGATCAAATGCAATGTCCCATA GAATTATAACAAAGACAACACTATGCTTCACTAATCTAGTTGGACCATTGGAAGACATTGGGTTCTATGGGCACCCTTTGTCATTTCTTGCCCCTAGCTC TTTCAACCAGCCTCATGGGCTGATGATAAACTTCCAGAGCTGTGTAAACAAGATGACAATCGTACTGTCAACTGAAGAAAGCACGGTTCCTGATCCACAC CAGCTCTGTGACGACATTCTTCAGTCACTTCAACTCATCAAGAACGCTGTCGTATCTTCAGGACTTTCTTGTGGTTAA
AA sequence Show only first row Show all	>Lus10004008 pacid=23153375 polypeptide=Lus10004008 locus=Lus10004008.g ID=Lus10004008.BGIv1.0 annot-version=v1.0 MEEVGLRWRRGTKPSTLKPIDVTRKAAGEEEEEEELLSPASRLFHEPNFNVYVVAILGCKTKIDPDLVVSKLPHTLLKHPRFSSLQVVVNDGNENKEKHM KWVPTTVNLKNHVIVPDVDQSTFPTSAAGQKFVEDYISDLTKTTIDGSKQPLWDLHLLNVKTAPDSEAVGVFRIHHSLGDGTSLMSLLLACTRQISDPES LPTIPTRKPKKQEGEDFNDGGVWRRVTWRMVVRVWMMAVLMWNTAVDVLAFFLTAIGLKTDTVTPLMGPHGVEHLPRRFVWRTVSLDDFKFVKNAMDATI NDVALGATQAGLSRYLNRKFGGNDDDGETKNSLLSKGRICIRSTLLVNLRPGPGIQALADMMEKDTEVKWGNWIGFILLPFTVGIRNDPLDYVREAKAVV DRKKRSLEALFTFSIAEIVLKLLGIKRSNAMSHRIITKTTLCFTNLVGPLEDIGFYGHPLSFLAPSSFNQPHGLMINFQSCVNKMTIVLSTEESTVPDPH QLCDDILQSLQLIKNAVVSSGLSCG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10004008 [exp]	0	1
AT1G51460		ABCG13	ATP-binding cassette G13, ABC-...		Lus10000339 [exp]	1.0	0.9911
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10034329 [exp]	2.6	0.9747
AT3G54200			Late embryogenesis abundant (L...		Lus10007649 [exp]	3.7	0.9779
AT3G63480			ATP binding microtubule motor ...		Lus10035343 [exp]	4.9	0.9674
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10016732 [exp]	6.5	0.9761
AT5G44940			F-box/RNI-like superfamily pro...		Lus10000726 [exp]	6.6	0.9756
AT1G02335		GL22	germin-like protein subfamily ...		Lus10023350 [exp]	7.4	0.9755
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007352 [exp]	8.0	0.9746
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10002525 [exp]	8.4	0.9634
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10010759 [exp]	9.2	0.9753

Compare expression of checked genes

Lus10004008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.