Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01320 1909 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G28080 1309 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15290 1152 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G52140 332 / 1e-92 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030259 [exp] 2556 / 0 AT1G01320 1731 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10035822 [exp] 1194 / 0 AT4G28080 2117 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036604 [exp] 835 / 0 AT4G28080 1357 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020453 [exp] 618 / 0 AT1G01320 135 / 4e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10030258 [exp] 386 / 1e-123 AT1G01320 169 / 1e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10037481 [exp] 325 / 3e-90 AT3G52140 1894 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) Lus10015708 [exp] 321 / 4e-89 AT3G52140 1874 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G170900 [exp] 2154 / 0 AT1G01320 2033 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G098600 [exp] 2143 / 0 AT1G01320 2036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.018G102500 [exp] 1358 / 0 AT4G28080 2144 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G180100 [exp] 1346 / 0 AT4G28080 2109 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031000 [exp] 1212 / 0 AT1G15290 1522 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G271200 [exp] 323 / 6e-90 AT3G52140 1842 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) Potri.009G065300 [exp] 321 / 4e-89 AT3G52140 1758 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004009 pacid=23153350 polypeptide=Lus10004009 locus=Lus10004009.g ID=Lus10004009.BGIv1.0 annot-version=v1.0 ATGGCGCCGAGTAAGAACAGCCGCGGTAAGGCTAAGGGAGAGAAGAAGAAGAAAGACGAGAAGATTCTGCCGACAGTAATGGATATCACCGTGAACCTTC CCGACGATACTCATGTCATTCTCAAGGGAATATCAACGGACAGAATTATAGACGTTCGTCGTCTTTTGTCCGTCAACACGGAAACTTGCTCCGTCACTAA TGTCTCCTTCACTCATGAGGTTAGAGGCCCGCGGTTGAAAGATACGGTCGACGTTACGGCTCTCAAGCCTTGCGTCCTCACTTTGATTGAAGAGAATTAC GATGAAGGTCTTGCCGTCGCGCATGTCCGGCGGCTATTGGACGTCGTCGCCTGTACGACCTGGTTCGGTCCGTCGGACGCTGGCGGAAAGAATGGTGCCA GCAAGAAGGCTGCTGCTGCTGCTGTTAAGTCTGAAGAAGGTCCTGCTGGCGGAGGAGGGAAGCAGCCGTCGCTTCAGGACGTGCCGGAGGAAGAAGGAGA GCTGAGCCATTCTTGCCCTAAGCTTGGGCAATTTTATGACTTCTTCTCGCTGTCGCACCTCACTCCTCCTCTTCAGTTTATTAGGAAGGGGGATAAGCGG CAGGTGGATGAGATTTCAGCTGAGGATCACCTTTTTTCACTGGATGTGAAGCTTTGCAATGGAAAGCTGGTCCAGGTGGAAGCTTGCCGAAAAGGATTCT TTAGTGTAGGGAAACAGCGGATTCTTTGCCACAGTCTTGTGGACTTGTTGCGACAGCTTAGTAGAGCCTTTGACAATGCTTATAATGAGCTCATGAAAGC ATTCTCAGACCGCAACAAGTTTGGGAATCTTCCTTATGGATTCAGAGCAAACACATGGCTTATCCCTCCTGCTGCTGCCCAATTTCCGTCATCTTTCCCG CCTCTTCCTGTTGAGGATGAGAAGTGGGGAGGAAATGGAGGTGGTCTTGGTAGAGATGGGAAACAAGATCTGATACCTTGGGCTGATGAATTTTCATATC TTGCGTCCATGCCTTGCAAGAATGCAGAGGAAAGGCAGGTCCGAGACAGGAGGGCGTTTCTTCTCCACAGCCTATTTGTTGACATTGCCATTTTCAGGGC CATTAAAGCTGTACAGTTAGTAAATGAAAAGAAAGAGTTACCTGGTTCAATTAACAATTGTGAAGGTCTATACACAGAGAGAGTAGGGGATTTGATTATT ACGATTGTGAAAGATGTTTCCAATGCTAGCTCAAAGATGGACACTAAGATCGATGGAATTCAAGCAGCCGGGGTAGACAAAAAAAATTTACTAGAAAGAA ACTTGCTGAAGGGGATAACCGCAGATGAAAATACTGCTGCACATGATATTGCCACACTTGGGACTGTAAATGTGAGATACTGCGGTTATGTTGCTACTGT AAAAGTTGAGGAAAGAAAGGAGAGTAACGTCACATCTCAAAGAGTTACACTTGAACAGCCCGACGGAGGAGCCAATGCCCTTAATATTAGCAGTTTGAGA CTGTTACTTCACAAAACACCCAATTCAGAGCACAGCAAACTAGATTTGTCCTCACGAGCTACAGAACAGGAAGAGTTCAGTGCTTCCCAGGGTTTTGTAG AGAGACTACTGGAAGAAAGTATTTTACAACTTGAAGAAGAGGAAGCAGAGCAAGTTCCTTTTGTACGGTGGGAGCTTGGCGCTTGTTGGATACAACATTT GCAAGATCAGAAAAATGCAGATAAGGATAAGAAACCTTCTGATAAGAATAAGAAATCTTCCACAGAAAAAGAAATCAAGGTTGAGGGACTTGGTACGCCT CTTAAGTCTCTCAAGGCAAAGAAAAAAACGGATGAAAGCGAAAAACCAAGAGTCTCTGCTAATGGTGTAGTCTGGGAACTCGAGGATTCTGCTTCTCCAA TGTGTCAACTTGAAAGTTCTGCAGATGATGAGCTTTCGCTACAGAGGATTTTGTCGGAAACGGCTTTTGCTCGACTGAAAGAAACAGACACTGGACTTCA TTCTAAGTCTTTGCCCGAATTGATTGACTTGTCTCAGAAATATTACACTGAGGTAGCTCTTCCAAAATTGGTTGCAGATTTTGGTTCGCTCGAACTTTCT CCAGTTGATGGCCGAACTCTAACTGATTTTATGCACACTAGAGGTCTTCGTATGCGTTCACTGGGACGTGTTGTCAAGCTTTCAGAGAAGTTGTCACATG TACAGTCGCTTTGCATTCATGAGATGATTGTACGAGCCTTTAAGCACATTATCCAGGCTGTCATTGCAGCTGTGGCTGATCATGATAAAATGGCTGTATC CGTAGCTGCTGCTCTAAATCTCATGCTCGGAGTACCTGAAAATCAAGATTCCAAGCCTTCCCATGTCCATTCTCTTGTATGGAGATGGCTAGTGTTATTT CTAAGAAAACGATTTGATTGGGAACTTAGCATCCCAAACTTCAAAGATGTCCGAAAATTTGCTTTGCTTCGTGGATTGTGCCACAAGGTGGGTATTGAGT TGGTTCCGAGGGATTTTGACATGGATTCTCCATACCCATTCCAGAAATCAGATGTTGTCAGCCTTGTCCCAGTGCATAAGCAAGCAGCGTGTTCCTCTGC AGATGGAAGGCAGCTTTTGGAATCATCAAAAACAGCCTTAGATAAAGGAAAACTTGAAGATGCCGTAACATATGGTACAAAGGCACTTGCAAAGCTGGTA GCTGTTTGCGGCCCTTACCATAGAATGACTGCAGGAGCTTACAGCCTTCTTGCGGTTGTACTATATCACACTGGCGACTTCAACCAGGCCACTATATATC AGCAGAAAGCACTTGATATCAATGAGAGAGAATTAGGACTTGACCACCCAGATACCATGAAGAGTTATGGAGATCTTGCTGTCTTCTATTACCGACTCCA ACATACTGAGCTGGCTCTTAAGTATGTGAAGCGTGCCCTGTACCTGTTGCATCTGACATGTGGTCCATCACACCCAAATACTGCTGCGACATACATAAAT GTGGCTATGATGGAGGAAGGGCTGGGAAATGTGCATGTTGCACTTAGATATCTTCATAAGGCTCTAAAGTGCAACCAAAGGTTGCTTGGCCCAGACCACA TTCAGACGGCAGCAAGTTACCATGCAATTGCAATCGCACTATCATTGATGGAAGCATACCCCTTGAGCGTACAGCATGAACAAACAACTCTACAAATTCT CCGAGCAAAGCTGGGTCCAGATGATTTGCGTACTCAGGATGCTGCTGCTTGGCTTGAGTACTTTGAGTCAAAAGCATTTGAGCAGCAAGAAGTTGCAAGG AATGGTACAAAAAAGCCAGATGCATCAATTGCTAGCAAGGGGCATCTGAGTGTATCTGATTTACTAGATTATATCAATCCGAGCCAGGATCCCAAGGGGA GAGAAGCAGCAGCTAAAAGAAAAAGCTACTTGACAAAGGTAAAGGGAAAAGCTGAACCTGAACCCATTGTTCCAAGTTTTCCTGAATCTCCAAAAGAGAA AGTCGAAGAAGCAGCTGATGAAGAGTCAGTTATTCCTATCGTCAAAGAAGAACTCAGTTTGATGGAGAATGAGAATGAACAACCTGACTCAGAAGGGTCT ATAGATGAAAAATCAGTTATGAAAGAGGAAGTATTACATGAAACACATGCTGAAGGAGATGATGGATGGCAACCGGTTCAAAGACCACGATCAGCTGGCT CTAATGGTCGACGGAGGAAACAACATCGGGGTATCATTGGCAAAGTATATGTTCATACAAAAAAGGTTACGGATGCTGAAGTGGATTATGCTTCGCCCAA GAACACCCTTCAGAGTACTAAGCATTACATTGTAAAGAAACGACCCATCTCTCAGGGAACTTATGCAGACCAACAAGGTGCACTTCCTTCTCAGCCAGCC AAGTATGGGCGGAGGATCACAAAAACCGTAGCATATCGAGTAAAATCTGTTCCTTCGCCTGATAAAGATGCTGCTGCCTCCGAGACTTCTGAACAAGTGG GCAACGTTTTCTCCTCTGCAACAGAACCTGTTACAATTTCTGCTCCAAGTGAGGGTAACTCGTTAAAGAATCAAATGGTTAGCTTGGGAAAGTCCCCATC GTACAAGGAAGTCGCATTGGCGCCACCTGGCACTATCTGGTCACCTGTTTCGGATATTGGAGATAAACCAGTTACTGGTGTTCATAACCATGAAGAGACA CAGGAAGCTAGGGAAATTGCTATTCCAGCTGTATTCGAGAAGAACACAGAAAATGCATCAATCGACTTGGTAGAAGATAGTTTGACGACACCCTCCAGCG TGCAAGAATCCAAGTCTACTCTTTTAGATCATGAAGAAAACGACATATTGACAGATGGTTCAATCGACATACCCGAAGCATTCCAGAATAATCAGAGTTC TGCGTCAGATTTCAGACAACATTCAGAAGATGAAATTGTTATCCTTGAAAATATCCTTGAAAACAAAGAAGAAAGCCACCCTATCAGTGAAAGAGAAGGC TCAGGTCTTGAAGGTAATTCTGATTCCTCATTTCTGGGAGAAGATCTGAAGGAAGTAGCATCTGTACCTAATAAGAAGCTATCTGCCTCTGCTGCTCCAT TTAACCCTTCGCCATCTGTTATCCGACCCGTACCACTCCCTCTGAACATTCCTCTTCCTTCCGGTCCCGGTCCGGTTCAAGCCGTTGCACCCTGGCCAGT AACCCTTCACCCGGTGACTGGAACTGTCATATCGACTGTTAGTCCACTCCCCTCTCCCCACCACCCGTTTCCATCGCCTCCTCATACCCCGAACATGATG CGACCACTGTCCTTCATGTACCCACCTTACAGTCAAGCCCAGGGAATCCCACCAAGTACATATCCCATCACCAGCACTGCATTTCATCCAAGCCATTACT CTTGGCAGTGCAATGTGAACAGAAATGTTCCGGAGTTTGTTCCTACCACAATGTGGCCTGGTTGTCACATGGTGGAGTTCCCTCCTGCCCCTTCACCTGT TATGGAGCCCGTTTCTGATCCTGTACCAGACCATAATGAGACAATGGAGTGTCCTGACTCGTTCCTGCCAGCAGATATTGTCAATGTAACTGATTCTGAC AAGGACGTGAGTCTTCCGGTGGAAGAAAATGGTCGTTTGAACTTGTCCGGTGCCGACACTTCTACTAGCAACAGCATGAAAGAGAACTCGGCTGAGGGGG AGAGAACTTTCAGTATTTTGATAAGGGGAAGGAGAAACCGAAAGCAGACATTGAGAATGCCAATAAGTTTGCTCAATAAGCCATATGGCTCGCAGTCTTT CAAAGTTGTTTACAACAGAGTAGTGAGAGGTAGTGAATCTCCAAAGCAGACTGCCGTTTCTTCAACTGGTTAG
AA sequence Show only first row Show all	>Lus10004009 pacid=23153350 polypeptide=Lus10004009 locus=Lus10004009.g ID=Lus10004009.BGIv1.0 annot-version=v1.0 MAPSKNSRGKAKGEKKKKDEKILPTVMDITVNLPDDTHVILKGISTDRIIDVRRLLSVNTETCSVTNVSFTHEVRGPRLKDTVDVTALKPCVLTLIEENY DEGLAVAHVRRLLDVVACTTWFGPSDAGGKNGASKKAAAAAVKSEEGPAGGGGKQPSLQDVPEEEGELSHSCPKLGQFYDFFSLSHLTPPLQFIRKGDKR QVDEISAEDHLFSLDVKLCNGKLVQVEACRKGFFSVGKQRILCHSLVDLLRQLSRAFDNAYNELMKAFSDRNKFGNLPYGFRANTWLIPPAAAQFPSSFP PLPVEDEKWGGNGGGLGRDGKQDLIPWADEFSYLASMPCKNAEERQVRDRRAFLLHSLFVDIAIFRAIKAVQLVNEKKELPGSINNCEGLYTERVGDLII TIVKDVSNASSKMDTKIDGIQAAGVDKKNLLERNLLKGITADENTAAHDIATLGTVNVRYCGYVATVKVEERKESNVTSQRVTLEQPDGGANALNISSLR LLLHKTPNSEHSKLDLSSRATEQEEFSASQGFVERLLEESILQLEEEEAEQVPFVRWELGACWIQHLQDQKNADKDKKPSDKNKKSSTEKEIKVEGLGTP LKSLKAKKKTDESEKPRVSANGVVWELEDSASPMCQLESSADDELSLQRILSETAFARLKETDTGLHSKSLPELIDLSQKYYTEVALPKLVADFGSLELS PVDGRTLTDFMHTRGLRMRSLGRVVKLSEKLSHVQSLCIHEMIVRAFKHIIQAVIAAVADHDKMAVSVAAALNLMLGVPENQDSKPSHVHSLVWRWLVLF LRKRFDWELSIPNFKDVRKFALLRGLCHKVGIELVPRDFDMDSPYPFQKSDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLV AVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEVAR NGTKKPDASIASKGHLSVSDLLDYINPSQDPKGREAAAKRKSYLTKVKGKAEPEPIVPSFPESPKEKVEEAADEESVIPIVKEELSLMENENEQPDSEGS IDEKSVMKEEVLHETHAEGDDGWQPVQRPRSAGSNGRRRKQHRGIIGKVYVHTKKVTDAEVDYASPKNTLQSTKHYIVKKRPISQGTYADQQGALPSQPA KYGRRITKTVAYRVKSVPSPDKDAAASETSEQVGNVFSSATEPVTISAPSEGNSLKNQMVSLGKSPSYKEVALAPPGTIWSPVSDIGDKPVTGVHNHEET QEAREIAIPAVFEKNTENASIDLVEDSLTTPSSVQESKSTLLDHEENDILTDGSIDIPEAFQNNQSSASDFRQHSEDEIVILENILENKEESHPISEREG SGLEGNSDSSFLGEDLKEVASVPNKKLSASAAPFNPSPSVIRPVPLPLNIPLPSGPGPVQAVAPWPVTLHPVTGTVISTVSPLPSPHHPFPSPPHTPNMM RPLSFMYPPYSQAQGIPPSTYPITSTAFHPSHYSWQCNVNRNVPEFVPTTMWPGCHMVEFPPAPSPVMEPVSDPVPDHNETMECPDSFLPADIVNVTDSD KDVSLPVEENGRLNLSGADTSTSNSMKENSAEGERTFSILIRGRRNRKQTLRMPISLLNKPYGSQSFKVVYNRVVRGSESPKQTAVSSTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10004009 [exp]	0	1
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10012180 [exp]	2.0	0.9248
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10013858 [exp]	4.2	0.8777
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030259 [exp]	4.6	0.9038
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10007565 [exp]	4.9	0.9165
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10022279 [exp]	6.2	0.8645
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043198 [exp]	6.7	0.8923
AT4G28080			Tetratricopeptide repeat (TPR)...		Lus10036604 [exp]	8.5	0.8672
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Lus10000675 [exp]	10.7	0.8291
AT5G42390		SPP	stromal processing peptidase, ...		Lus10041263 [exp]	11.2	0.8518
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10001060 [exp]	13.1	0.9011

Compare expression of checked genes

Lus10004009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.