Plant FIBer expression Database

Lus10004010 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71760 52 / 2e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030260
[exp]
181 / 4e-58 AT1G71760 135 / 4e-39 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G062800
[exp]
68 / 6e-14 AT1G71760 183 / 6e-57 unknown protein
PFAM info
Representative CDS sequence
>Lus10004010 pacid=23153370 polypeptide=Lus10004010 locus=Lus10004010.g ID=Lus10004010.BGIv1.0 annot-version=v1.0
ATGTGGAGAAGAACCGGCGGAGAAGAAAAGGAAAATGTCCTCCACCGTCTTTATCGCTGTTCAGTGTTGCCAGTGCTCGACTATGCAGGTAAACCTACAG
TTTTCTCCCATCCGTCTCTGGTCTGTATTCTCCGCCTGGATGTCCATTTCAGCTTCTCCGTCTCCACTTGTGCAGGCGAAGCAGAAAAAGAAAAGCAGCA
ACAGATGGACCTGTGTTGTATGCAACCCATGGCCAAGGACATTCGTCAGTTCGTTCAATCGTTCAATATGTCCCGTAAATATGCCGATGAACAGGTGTCT
CTGGGAGAACAGGAAGCGACGACTCAGGAGGAGGAGCCTAGGGTTCCCGCTAGTAGGAAGAGGCGCGTTGACTGGAGCGAATACCTAGATCCAGCTGACT
ACGAACCTCAGGAGACTGTGGAAGACGGAGATGAAGGAGGAGATGTTATGGTGAGTACAGAGATGCCTAAGATAGCCAGGTTAAGGAATGGAGCTTATAG
GGACAGTGATGGAGACGGTAGCTGA
AA sequence
>Lus10004010 pacid=23153370 polypeptide=Lus10004010 locus=Lus10004010.g ID=Lus10004010.BGIv1.0 annot-version=v1.0
MWRRTGGEEKENVLHRLYRCSVLPVLDYAGKPTVFSHPSLVCILRLDVHFSFSVSTCAGEAEKEKQQQMDLCCMQPMAKDIRQFVQSFNMSRKYADEQVS
LGEQEATTQEEEPRVPASRKRRVDWSEYLDPADYEPQETVEDGDEGGDVMVSTEMPKIARLRNGAYRDSDGDGS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G71760 unknown protein Lus10004010
[exp]
0 1
AT3G19210 ATRAD54, CHR25 homolog of RAD54 (.1.2) Lus10014047
[exp]
2.8 0.9283
AT5G62360 Plant invertase/pectin methyle... Lus10024596
[exp]
3.9 0.9088
AT4G01030 pentatricopeptide (PPR) repeat... Lus10017350
[exp]
4.2 0.8711
AT5G11320 YUC4 YUCCA4, Flavin-binding monooxy... Lus10013125
[exp]
5.5 0.9189
AT5G10530 Concanavalin A-like lectin pro... Lus10007077
[exp]
5.5 0.8846
AT1G03440 Leucine-rich repeat (LRR) fami... Lus10031601
[exp]
5.7 0.8788
AT5G48380 BIR1 BAK1-interacting receptor-like... Lus10036704
[exp]
6.5 0.8801
AT5G48170 SNE, SLY2 SNEEZY, SLEEPY2, F-box family ... Lus10006381
[exp]
6.7 0.8868
AT3G10080 RmlC-like cupins superfamily p... Lus10020631
[exp]
7.7 0.8684
AT3G28857 bHLH PRE5 Paclobutrazol Resistance 5, ba... Lus10030675
[exp]
9.2 0.7830

Lus10004010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.