Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61740 424 / 2e-136 SDG14, ATX3 SET domain protein 14 (.1.2) AT4G27910 394 / 9e-125 SDG16, ATX4 SET domain protein 16 (.1) AT5G53430 390 / 3e-123 SET29, ATX5, SDG29 SET domain group 29 (.1) AT1G05830 169 / 7e-44 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT2G31650 163 / 8e-42 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT5G42400 125 / 2e-29 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT1G76710 106 / 4e-24 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT1G02580 95 / 3e-20 SDG5, EMB173, MEDEA, FIS1, MEA SET DOMAIN-CONTAINING PROTEIN 5, MEDEA, FERTILIZATION INDEPENDENT SEED 1, EMBRYO DEFECTIVE 173, SET domain-containing protein (.1) AT4G02020 93 / 2e-19 SDG10, SWINGER, SWN, EZA1 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) AT2G23380 93 / 2e-19 SET1, SDG1, ICU1, CLF SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030262 [exp] 951 / 0 AT3G61740 742 / 0.0 SET domain protein 14 (.1.2) Lus10010121 [exp] 841 / 0 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10005007 [exp] 539 / 1e-180 AT4G27910 611 / 0.0 SET domain protein 16 (.1) Lus10012626 [exp] 501 / 2e-165 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10019026 [exp] 296 / 1e-87 AT4G27910 1171 / 0.0 SET domain protein 16 (.1) Lus10026725 [exp] 163 / 1e-41 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 162 / 2e-41 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10016051 [exp] 125 / 2e-29 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10025172 [exp] 125 / 3e-29 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G098400 [exp] 461 / 2e-150 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.002G170600 [exp] 459 / 3e-149 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2) Potri.012G013900 [exp] 400 / 3e-126 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.015G014300 [exp] 397 / 3e-125 AT5G53430 1322 / 0.0 SET domain group 29 (.1) Potri.002G232800 [exp] 162 / 1e-41 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.014G146300 [exp] 162 / 2e-41 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.002G001000 [exp] 132 / 7e-32 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.018G023000 [exp] 131 / 2e-31 AT1G05830 160 / 2e-39 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.005G260100 [exp] 127 / 3e-30 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G195400 [exp] 111 / 1e-25 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0049 [flax] [poplar] Tudor PF00855 [flax] [poplar] PWWP PWWP domain CL0049 [flax] [poplar] PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10004012 pacid=23153357 polypeptide=Lus10004012 locus=Lus10004012.g ID=Lus10004012.BGIv1.0 annot-version=v1.0 ATGACGGAGAGTTACGGTAACATACCTCGGCCGCCGTTAAAGGAACGTAACGGCTTGAATAAAACGGAGAAAACTCGTATTACTAATAAGGACGTCTATA GGCCGGAGGACTTCGGCGTTGGAGATGTAGTTTGGGGGAGGTGTGGGAAGAGATACCCTTGGTGGCCAGCTGTAGTGATCAATCCTATATTGCAAGCTCC TGAAGCTGTTCTTAACTGTTGCGTCCCCGGCGCACTATGCGTCATGTTTTATGGCCATTCCAAGAACAGAACTCGAAGGGGTGTACGTTTGAAGGAGATG AAATGCTGTGATGGCTGTAATCTGATGTTGCCATGCAAAGTCGTGAAGGACCGGCAGGGTTCAATGTGCAAGACTGAAATTTTGTGTAAACACTGCGTCA AGTTAAGGAAGTCGAACCAGTATTGTGGGATATGCAAGAAGATTTGGCACCATTCCGATGAAGGGAATTGGGTCTGCTGTGATGGTTGTAATATTTGGAT CCATGCTGACTGTGACAACATATCCAATAAGCTTTTCAAGGACCTTGAAAACCGTCAATATTATTGCCCTGATTGCAAGAAGTTTGAAGTCCAGCCATTG AATTGCAAGAAAATGACGCTACCAGTCAAGTCGACTCTAAGCATGGAAGAAGCAATGCCACCTGATAAAGTAACTGTTGTGTGCAATGGGATGGAGGGTA CATATTTCCGGAAATTTCATTCAATTGTATGCAACTGTGGGTCTTGTGGATCAGGGAGGCAAACTCCCAGTGAATGGGAAAAGCACACTGGATGCAGAGC TAAGAAATGGAAGTGTAGTGTCAAAGTGAAGGATACGACGTTACTGCTCGAAAAATGGATTGCTGGCTACAATGTGCATGATTCGAATCCTTTGGATATA GATAAGCAGAAGCTATTGACCTTTTTGCAAGGAGGTGCTTTAAAGCCCACAGATGTTGATAGTCTTTGGGTTCATATCACTTGTGCATGGTTTCATCCTC AAGTTGGTTTGTTGGATCATGAGAAGATGGAACCTGCTACTGGGTTTTTCCGAATCCCTTCAGCTACATTTTTGAAAGTGCACTGTGGTGTGAAAAATGG GAAAGAACAAACCAAGAACTTAATATACTGTGCTGTTCACAGGACCCCAAACCCTGATTCAGCTGTAGCTGTGCGAACTCCTGAGGGAATTCCGGCTACC AAAAGGTTACTGCAAAATCAGAATGAGTTACTCCAGGGTTCGAGACTGATGCCATCTAAGACAGCTGAACTTCCTGAACTCTCAACCTCGGGGACTGATG ATGAGCTTGAGCCTCTTTCTGCTGCAAGATGTCGTGTTTTCAAACGAACAAACAATAAGAGGTCGGCAGCAGAGTCGATTTTGCACTTGCCTATGGGTCC ACAACACCATTCTTTGGAGGCATTAACTAGATTTAGCTCCTCCAAGGACGAGGATGATCTGACGGGATTTACCTCATTTAAAGAAAGACTTCGCCATCTA CAGAAAACTGAAAAGACTCGAATTTGTCTTGGAAAATCTGGCATACATGGATGGGGATTGTTTGCTCGGAGAAACATTCAAGAGGGTGAGATGGTTGTTG AATATCGGGGAGAGATTGTTAGGCAGACTGTTGCTAACCTGCGAGAGGCTACGTACAGGTCGCTAGGCGAAGACTGTTATCTGTTCAAGATCAGTGAGGA CATGGTAATTGATGCCACAAACAAAGGGAACATAGCACGCTTAATCAACCATTCATGCACCCCGAACTGCTTCGCAAGGATAGTGAGTGTCGGTGGTGCG GAGAATCGTGTAGTGCTCATTGCGAAGAGAGACATTTCGGTGGCATCGGAGCTGATGTATGACTACTTGTTCGAAGCCGACGAGCCAGATGAGCAGAAAG TGCCTTGCCTGTGTGGAACTCCAGGTTGCAGGAAGTTTATGAACTAA
AA sequence Show only first row Show all	>Lus10004012 pacid=23153357 polypeptide=Lus10004012 locus=Lus10004012.g ID=Lus10004012.BGIv1.0 annot-version=v1.0 MTESYGNIPRPPLKERNGLNKTEKTRITNKDVYRPEDFGVGDVVWGRCGKRYPWWPAVVINPILQAPEAVLNCCVPGALCVMFYGHSKNRTRRGVRLKEM KCCDGCNLMLPCKVVKDRQGSMCKTEILCKHCVKLRKSNQYCGICKKIWHHSDEGNWVCCDGCNIWIHADCDNISNKLFKDLENRQYYCPDCKKFEVQPL NCKKMTLPVKSTLSMEEAMPPDKVTVVCNGMEGTYFRKFHSIVCNCGSCGSGRQTPSEWEKHTGCRAKKWKCSVKVKDTTLLLEKWIAGYNVHDSNPLDI DKQKLLTFLQGGALKPTDVDSLWVHITCAWFHPQVGLLDHEKMEPATGFFRIPSATFLKVHCGVKNGKEQTKNLIYCAVHRTPNPDSAVAVRTPEGIPAT KRLLQNQNELLQGSRLMPSKTAELPELSTSGTDDELEPLSAARCRVFKRTNNKRSAAESILHLPMGPQHHSLEALTRFSSSKDEDDLTGFTSFKERLRHL QKTEKTRICLGKSGIHGWGLFARRNIQEGEMVVEYRGEIVRQTVANLREATYRSLGEDCYLFKISEDMVIDATNKGNIARLINHSCTPNCFARIVSVGGA ENRVVLIAKRDISVASELMYDYLFEADEPDEQKVPCLCGTPGCRKFMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10004012 [exp]	0	1
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10032469 [exp]	1.0	0.9696
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10001452 [exp]	3.5	0.9643
AT1G79890			RAD3-like DNA-binding helicase...		Lus10011447 [exp]	3.9	0.9541
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10012889 [exp]	4.2	0.9592
AT1G29630			5'-3' exonuclease family prote...		Lus10011991 [exp]	6.6	0.9459
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10026954 [exp]	6.9	0.9530
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10002427 [exp]	7.5	0.9588
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027848 [exp]	9.0	0.9466
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10009446 [exp]	9.2	0.9485
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10004453 [exp]	10.2	0.9480

Compare expression of checked genes

Lus10004012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.