Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36000 270 / 5e-90 unknown protein AT3G61730 265 / 4e-88 RMF reduced male fertility (.1) AT3G62500 125 / 1e-33 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030262 [exp] 503 / 3e-171 AT3G61740 742 / 0.0 SET domain protein 14 (.1.2) Lus10012627 [exp] 382 / 2e-134 AT5G36000 337 / 5e-115 unknown protein Lus10010122 [exp] 303 / 2e-102 AT5G36000 271 / 2e-88 unknown protein Lus10035747 [exp] 122 / 7e-34 AT5G36000 97 / 5e-24 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G098300 [exp] 320 / 4e-110 AT5G36000 369 / 5e-128 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004013 pacid=23153346 polypeptide=Lus10004013 locus=Lus10004013.g ID=Lus10004013.BGIv1.0 annot-version=v1.0 ATGGGAAAAAACAACAGTTACGAACTGGATGCGTGGACCGAGATCGCCAAGTTTCTGGATGCTAAATCTATGATGAAGCTCGGATTGACTTGCTGGTGGT TCCATGGGGTTATTATGATGCAAGAAAACTTATGGAAGTCTGCTTGCTTGAGCCATCTTCAAGTTCCAGCTCCAGATCGTACGGAATTCAAATGGTTTGA TCTCTTCGCTTCGGCAATCAATGGAAGCCATTCTTACACATTCCGAGATAAGGAGAAGCATCTTGAATGGATGAGGCTTGGTGCCTTTTTCCTCGACTCG GCATCAGCAATCCTTACCCAAAGACTCACTTTACCGCTGAAAATTAAGAAACGCGACCCTCTGGAGACCATGTTGGCATCAAATGGAGCTTGTTTGCTAA CTGACCTTAGAAAAGGAATCTGGATAGCAGATCTACAGCTTGTTGGATGCTCGGTATGCGAAAGCAATACTTGCGAAGGAACAATGCAAACACTCGATGT GAGGCACTTAGAGTTGTTCCTCAGTGAAGGATACCAGAATGGCAGTTGGGTGTATGATCAGATAGGATCATACGAAGTTAAAGAACAAACTAATGCAGCC TCTGCGGCCATGTTAGACCTCAAGCACATCGCAGACCCTGAAACAGCTGATGTTTTCAATTCCAAACTCTGGGACGAAACACCCAACGCTTCCCAGCCAA AAGCTATGATCAGTTACCACCAAGTTGCAATTAGCACCCACTTGGAAAAGAATAAAGGTATGGCCAGTAAACAGTAA
AA sequence Show only first row Show all	>Lus10004013 pacid=23153346 polypeptide=Lus10004013 locus=Lus10004013.g ID=Lus10004013.BGIv1.0 annot-version=v1.0 MGKNNSYELDAWTEIAKFLDAKSMMKLGLTCWWFHGVIMMQENLWKSACLSHLQVPAPDRTEFKWFDLFASAINGSHSYTFRDKEKHLEWMRLGAFFLDS ASAILTQRLTLPLKIKKRDPLETMLASNGACLLTDLRKGIWIADLQLVGCSVCESNTCEGTMQTLDVRHLELFLSEGYQNGSWVYDQIGSYEVKEQTNAA SAAMLDLKHIADPETADVFNSKLWDETPNASQPKAMISYHQVAISTHLEKNKGMASKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36000			unknown protein		Lus10004013 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036927 [exp]	1.7	0.9966
AT1G02335		GL22	germin-like protein subfamily ...		Lus10023350 [exp]	2.4	0.9958
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Lus10000747 [exp]	2.8	0.9914
AT5G44940			F-box/RNI-like superfamily pro...		Lus10000726 [exp]	3.0	0.9957
					Lus10000586 [exp]	3.5	0.9829
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Lus10039852 [exp]	4.5	0.9907
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007352 [exp]	5.9	0.9792
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10042576 [exp]	8.5	0.9712
AT3G52610			unknown protein		Lus10014215 [exp]	8.9	0.9771
AT3G54200			Late embryogenesis abundant (L...		Lus10007649 [exp]	9.0	0.9765

Compare expression of checked genes

Lus10004013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.