Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09870 101 / 1e-28 SAUR-like auxin-responsive protein family (.1) AT2G28085 70 / 4e-16 SAUR-like auxin-responsive protein family (.1) AT2G46690 59 / 4e-12 SAUR-like auxin-responsive protein family (.1) AT1G19840 58 / 2e-11 SAUR-like auxin-responsive protein family (.1) AT4G00880 57 / 4e-11 SAUR-like auxin-responsive protein family (.1) AT2G37030 56 / 5e-11 SAUR-like auxin-responsive protein family (.1) AT1G75590 56 / 1e-10 SAUR-like auxin-responsive protein family (.1) AT4G38860 55 / 1e-10 SAUR-like auxin-responsive protein family (.1) AT1G56150 54 / 4e-10 SAUR-like auxin-responsive protein family (.1) AT5G10990 54 / 5e-10 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030263 [exp] 263 / 4e-92 AT3G09870 100 / 4e-28 SAUR-like auxin-responsive protein family (.1) Lus10013819 [exp] 214 / 4e-73 AT3G09870 92 / 7e-25 SAUR-like auxin-responsive protein family (.1) Lus10026531 [exp] 213 / 1e-72 AT3G09870 89 / 7e-24 SAUR-like auxin-responsive protein family (.1) Lus10023012 [exp] 150 / 1e-47 AT3G09870 97 / 5e-27 SAUR-like auxin-responsive protein family (.1) Lus10001398 [exp] 150 / 2e-47 AT3G09870 97 / 9e-27 SAUR-like auxin-responsive protein family (.1) Lus10001397 [exp] 82 / 6e-21 AT2G28085 69 / 8e-16 SAUR-like auxin-responsive protein family (.1) Lus10026532 [exp] 77 / 8e-19 AT3G09870 64 / 3e-14 SAUR-like auxin-responsive protein family (.1) Lus10016129 [exp] 76 / 4e-18 AT2G28085 115 / 4e-34 SAUR-like auxin-responsive protein family (.1) Lus10016130 [exp] 75 / 8e-18 AT2G28085 111 / 2e-32 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G092400 [exp] 150 / 9e-48 AT3G09870 108 / 8e-32 SAUR-like auxin-responsive protein family (.1) Potri.006G125100 [exp] 147 / 7e-47 AT3G09870 103 / 2e-29 SAUR-like auxin-responsive protein family (.1) Potri.010G226400 [exp] 82 / 7e-21 AT2G28085 51 / 3e-09 SAUR-like auxin-responsive protein family (.1) Potri.015G006800 [exp] 63 / 1e-13 AT2G46690 128 / 2e-39 SAUR-like auxin-responsive protein family (.1) Potri.014G103300 [exp] 61 / 1e-12 AT2G46690 152 / 2e-49 SAUR-like auxin-responsive protein family (.1) Potri.012G023400 [exp] 61 / 1e-12 AT2G46690 125 / 4e-38 SAUR-like auxin-responsive protein family (.1) Potri.002G176400 [exp] 60 / 2e-12 AT2G46690 145 / 2e-46 SAUR-like auxin-responsive protein family (.1) Potri.004G164300 [exp] 58 / 2e-11 AT5G10990 170 / 3e-55 SAUR-like auxin-responsive protein family (.1) Potri.005G237000 [exp] 57 / 5e-11 AT1G75590 200 / 4e-67 SAUR-like auxin-responsive protein family (.1) Potri.009G125900 [exp] 57 / 6e-11 AT5G10990 157 / 5e-50 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10004014 pacid=23153342 polypeptide=Lus10004014 locus=Lus10004014.g ID=Lus10004014.BGIv1.0 annot-version=v1.0 ATGTCTAGCAATGACGAAAGCATCCGAGGCTTGATGCTGCTGAAGCTCTTCACAAGGAAGCTGCAAAGGACACTGATGATGATGACATCCAGAGGAGGAG GAGGAGGGCACAACCTGCAGAAAAGAAGTGGAGAGTTTGAAGAAGATGAACAAGGAATGAAAGTTGTACCAAATGATGTGAAGAGAGGGCAGTTTGCAGT TACAGCAACCAAAGGTGGGAAACCAAAGAGATTCATCGTCGAGTTGGATGACCTGAACGATCCGGATTTCGTCAACTTGCTTGAACAGGCTGAGGACAAA TTCGGGTTCCGGCAGGAAGGTGTACTTGAGGTCCCTTGTCACCCTGAGGAGCTTCAGAAGGTTCTAAGAGGAGGCAAGATTAGAAGAGCAAGTACAGAAT GGTGA
AA sequence Show only first row Show all	>Lus10004014 pacid=23153342 polypeptide=Lus10004014 locus=Lus10004014.g ID=Lus10004014.BGIv1.0 annot-version=v1.0 MSSNDESIRGLMLLKLFTRKLQRTLMMMTSRGGGGGHNLQKRSGEFEEDEQGMKVVPNDVKRGQFAVTATKGGKPKRFIVELDDLNDPDFVNLLEQAEDK FGFRQEGVLEVPCHPEELQKVLRGGKIRRASTEW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09870			SAUR-like auxin-responsive pro...		Lus10004014 [exp]	0	1
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Lus10014411 [exp]	1.0	0.9913
AT1G17200			Uncharacterised protein family...		Lus10042471 [exp]	1.4	0.9843
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10002174 [exp]	2.6	0.9545
					Lus10002266 [exp]	6.0	0.9503
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Lus10023913 [exp]	6.0	0.9565
AT1G15260			unknown protein		Lus10035880 [exp]	6.7	0.9618
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10019637 [exp]	6.7	0.9622
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10017600 [exp]	6.9	0.9485
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10011682 [exp]	7.3	0.9292
AT1G17200			Uncharacterised protein family...		Lus10026196 [exp]	7.7	0.9366

Compare expression of checked genes

Lus10004014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.