Plant FIBer expression Database

Lus10004015 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46420 206 / 2e-66 Plant protein 1589 of unknown function (.1.2)
AT3G61700 187 / 3e-59 Plant protein 1589 of unknown function (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030264
[exp]
281 / 4e-95 AT2G46420 346 / 4e-117 Plant protein 1589 of unknown function (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G169900
[exp]
213 / 4e-69 AT2G46420 500 / 1e-178 Plant protein 1589 of unknown function (.1.2)
Potri.014G097800
[exp]
206 / 3e-66 AT2G46420 503 / 5e-180 Plant protein 1589 of unknown function (.1.2)
Potri.012G001700
[exp]
41 / 0.0001 AT2G46420 165 / 3e-48 Plant protein 1589 of unknown function (.1.2)
PFAM info
Representative CDS sequence
>Lus10004015 pacid=23153377 polypeptide=Lus10004015 locus=Lus10004015.g ID=Lus10004015.BGIv1.0 annot-version=v1.0
ATGGGGTATCCTGTTCTTCAACAACCACCAATGCATCATGCTCCAGGCCACCAACCCCATCTCGACCCCATGGCCCATGGGATATCGAGCTGCCATGTCG
TCAATGGTGTCCCAGCACCAGCAAACTTCCATCCCATGCGCATGAACTCTGGAAATGACATGGTCATGGAAACGAGTGTTGCTGATGTATCAGCACCGAT
GATACCACCGAATGGTACCATGTCGGAAATGGCTGTAAGTCCTACATCAGTGGCTTCCAGCGGTCATTTCCCTTTCACGGCGTCAGAGATATCCGGGATG
GGAGTGGACACGTCAGCGCTGGACACAGCGTTTACATCCGACGTGGCTAGCTCAGTAGGGTTGCAGCTCGGACCGGACGGTGGGGCTGGAGGGTCTAGAT
CACTGGATCAGATTCAGTGGAACTTCAGCCTCTCGGACCTAACAGCAGATTTATCCAACTTGGGAGATGATGAAGTATGGAAGACCTAA
AA sequence
>Lus10004015 pacid=23153377 polypeptide=Lus10004015 locus=Lus10004015.g ID=Lus10004015.BGIv1.0 annot-version=v1.0
MGYPVLQQPPMHHAPGHQPHLDPMAHGISSCHVVNGVPAPANFHPMRMNSGNDMVMETSVADVSAPMIPPNGTMSEMAVSPTSVASSGHFPFTASEISGM
GVDTSALDTAFTSDVASSVGLQLGPDGGAGGSRSLDQIQWNFSLSDLTADLSNLGDDEVWKT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G46420 Plant protein 1589 of unknown ... Lus10004015
[exp]
0 1
AT2G46420 Plant protein 1589 of unknown ... Lus10030264
[exp]
1.4 0.9230
AT1G80030 Molecular chaperone Hsp40/DnaJ... Lus10011484
[exp]
2.0 0.9188
AT3G61700 Plant protein 1589 of unknown ... Lus10004016
[exp]
2.4 0.9123
AT2G29760 OTP81 ORGANELLE TRANSCRIPT PROCESSIN... Lus10040680
[exp]
2.8 0.8974
AT1G80030 Molecular chaperone Hsp40/DnaJ... Lus10023122
[exp]
6.3 0.8898
AT5G17790 VAR3 VARIEGATED 3, zinc finger (Ran... Lus10013630
[exp]
6.3 0.8782
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Lus10017605
[exp]
9.2 0.8689
AT2G40840 DPE2 disproportionating enzyme 2 (.... Lus10035408
[exp]
11.5 0.8523
AT1G24040 Acyl-CoA N-acyltransferases (N... Lus10030649
[exp]
12.8 0.8725
AT5G37980 Zinc-binding dehydrogenase fam... Lus10040177
[exp]
13.4 0.8764

Lus10004015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.