Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61700 235 / 1e-76 Plant protein 1589 of unknown function (.1.2) AT2G46420 221 / 3e-71 Plant protein 1589 of unknown function (.1.2) AT3G10250 140 / 3e-40 Plant protein 1589 of unknown function (.1.2) AT5G04090 130 / 1e-36 Plant protein 1589 of unknown function (.1.2) AT3G55240 64 / 3e-13 Plant protein 1589 of unknown function (.1) AT2G29605 67 / 7e-13 Plant protein 1589 of unknown function (.1) AT3G28990 57 / 9e-11 Plant protein 1589 of unknown function (.1) AT1G10657 57 / 1e-10 Plant protein 1589 of unknown function (.1.2.3.4) AT1G49700 57 / 2e-09 Plant protein 1589 of unknown function (.1.2) AT5G02580 54 / 2e-09 Plant protein 1589 of unknown function (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030264 [exp] 275 / 3e-91 AT2G46420 346 / 4e-117 Plant protein 1589 of unknown function (.1.2) Lus10019011 [exp] 150 / 6e-44 AT3G61700 212 / 4e-66 Plant protein 1589 of unknown function (.1.2) Lus10039340 [exp] 145 / 3e-42 AT3G61700 182 / 6e-55 Plant protein 1589 of unknown function (.1.2) Lus10031001 [exp] 132 / 8e-37 AT3G10250 392 / 3e-137 Plant protein 1589 of unknown function (.1.2) Lus10035397 [exp] 130 / 2e-34 AT3G23270 526 / 2e-171 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10025300 [exp] 54 / 2e-09 AT5G02580 115 / 5e-35 Plant protein 1589 of unknown function (.1.2) Lus10024432 [exp] 54 / 3e-09 AT5G02580 112 / 1e-33 Plant protein 1589 of unknown function (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G169900 [exp] 233 / 2e-75 AT2G46420 500 / 1e-178 Plant protein 1589 of unknown function (.1.2) Potri.014G097800 [exp] 215 / 9e-69 AT2G46420 503 / 5e-180 Plant protein 1589 of unknown function (.1.2) Potri.015G019500 [exp] 154 / 2e-45 AT3G61700 161 / 1e-46 Plant protein 1589 of unknown function (.1.2) Potri.012G001700 [exp] 141 / 1e-40 AT2G46420 165 / 3e-48 Plant protein 1589 of unknown function (.1.2) Potri.006G041200 [exp] 138 / 3e-39 AT3G10250 396 / 4e-139 Plant protein 1589 of unknown function (.1.2) Potri.016G038100 [exp] 133 / 2e-37 AT3G10250 381 / 5e-133 Plant protein 1589 of unknown function (.1.2) Potri.015G014550 [exp] 86 / 3e-19 AT3G10250 92 / 2e-20 Plant protein 1589 of unknown function (.1.2) Potri.012G001900 [exp] 82 / 5e-18 AT3G61700 82 / 2e-17 Plant protein 1589 of unknown function (.1.2) Potri.010G042300 [exp] 65 / 1e-13 AT1G10657 119 / 1e-36 Plant protein 1589 of unknown function (.1.2.3.4) Potri.008G189100 [exp] 64 / 3e-13 AT1G10657 122 / 8e-38 Plant protein 1589 of unknown function (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09713 [flax] [poplar] A_thal_3526 Plant protein 1589 of unknown function (A_thal_3526)
Representative CDS sequence Show only first row Show all	>Lus10004016 pacid=23153348 polypeptide=Lus10004016 locus=Lus10004016.g ID=Lus10004016.BGIv1.0 annot-version=v1.0 ATGGTTGCTTGCAAGAGAATAGTAACTGCCATTCTAAATAAGACTGCAACTGAGGCGAAACTGTCTTGTGATCTATGGTTGTGGATTTTGGAGCTGAACT ATCTCTATCTTGGCCTTTGGAGCAGCTTGTGGATTTTGGAGGTGAACGGAAGGAGATGCTATCAACTGGCTGTTAGCTGGAATGAAGAATTTAAAGCTCT TGCTGCATTAAGATTATTCAGGTCTCGAAACAAACAGGAAGTTCAGTCAAATCAGGGATCACAAGATTCTCAGAGTGACCAGCAGAACAATAACACTCCA GAGGCCCCAGCTGCAGAATCCGGTTCGGTATCTGCTTCCAGCAATGATAACAGAAAGGTCTCGCGCCAAGACATTGAACTTGTTCAAAACTTAATCGAAC GGTGTCTACAGCTGTACATGAACAAGGACGAGGTGGTCAAAACCCTCTTGACTCGTGCAAGGATCGACCCCGGCTTCACAACATTGGTATGGCAGAAGTT AGAAGAGGAGAACGCCGATTTCTTCAGGGCTTACTACATCCGTTTGAAGTTGAAGAAACAGATCCTTCTGTTCAACCATCTGCTCGAGAATCAATACCAT CTAATGAAGTATCCGGTGCCTCCGAAGGTCCCTTTGGCTCCTATGCAAAATGGGATGCATGCCATGCATGGTGAGTTCTTACCTTTGCTTGAAAAATATG ATTGGAAGCCGGTCGGGTTGGGTGGTTAA
AA sequence Show only first row Show all	>Lus10004016 pacid=23153348 polypeptide=Lus10004016 locus=Lus10004016.g ID=Lus10004016.BGIv1.0 annot-version=v1.0 MVACKRIVTAILNKTATEAKLSCDLWLWILELNYLYLGLWSSLWILEVNGRRCYQLAVSWNEEFKALAALRLFRSRNKQEVQSNQGSQDSQSDQQNNNTP EAPAAESGSVSASSNDNRKVSRQDIELVQNLIERCLQLYMNKDEVVKTLLTRARIDPGFTTLVWQKLEEENADFFRAYYIRLKLKKQILLFNHLLENQYH LMKYPVPPKVPLAPMQNGMHAMHGEFLPLLEKYDWKPVGLGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61700			Plant protein 1589 of unknown ...		Lus10004016 [exp]	0	1
AT2G46420			Plant protein 1589 of unknown ...		Lus10030264 [exp]	1.0	0.9506
AT2G46420			Plant protein 1589 of unknown ...		Lus10004015 [exp]	2.4	0.9123
AT5G59020			Protein of unknown function (D...		Lus10016455 [exp]	2.8	0.8808
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10020535 [exp]	3.0	0.9041
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10025101 [exp]	3.7	0.8830
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10037434 [exp]	4.0	0.9039
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10014382 [exp]	5.9	0.8952
AT2G20050			protein serine/threonine phosp...		Lus10012976 [exp]	8.7	0.8538
					Lus10043150 [exp]	9.6	0.8486
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10029118 [exp]	10.7	0.8850

Compare expression of checked genes

Lus10004016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.