Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63630 783 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08610 773 / 0 PDE340 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08620 744 / 0 ATRH25, STRS2 STRESS RESPONSE SUPPRESSOR 2, RNA HELICASE 25, DEA(D/H)-box RNA helicase family protein (.1) AT1G63250 550 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT2G07750 542 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT5G65900 251 / 6e-75 DEA(D/H)-box RNA helicase family protein (.1) AT3G18600 249 / 9e-75 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G54910 231 / 2e-66 DEA(D/H)-box RNA helicase family protein (.1) AT5G60990 198 / 8e-57 DEA(D/H)-box RNA helicase family protein (.1) AT1G55150 199 / 2e-56 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030265 [exp] 1002 / 0 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10012633 [exp] 746 / 0 AT5G08610 719 / 0.0 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010127 [exp] 665 / 0 AT5G08610 639 / 0.0 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10043479 [exp] 561 / 0 AT1G63250 767 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10034109 [exp] 330 / 3e-109 AT1G63250 444 / 5e-152 DEA(D/H)-box RNA helicase family protein (.1) Lus10027240 [exp] 253 / 7e-76 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009616 [exp] 252 / 2e-75 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038950 [exp] 250 / 1e-74 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10034110 [exp] 235 / 2e-71 AT2G07750 330 / 7e-106 DEA(D/H)-box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G097700 [exp] 815 / 0 AT5G63630 768 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G169800 [exp] 803 / 0 AT5G63630 810 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G124100 [exp] 571 / 0 AT1G63250 883 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G107300 [exp] 556 / 0 AT1G63250 841 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G250700 [exp] 264 / 3e-80 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G045300 [exp] 259 / 3e-78 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G423300 [exp] 231 / 2e-66 AT5G54910 858 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G013900 [exp] 205 / 2e-59 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 197 / 1e-56 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G084700 [exp] 195 / 2e-55 AT1G16280 616 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10004017 pacid=23153373 polypeptide=Lus10004017 locus=Lus10004017.g ID=Lus10004017.BGIv1.0 annot-version=v1.0 ATGTATGATAGAAGACATAAATTCAGAGAAGGCGCGCCGCCGCCACCGCAGAGGAGAAGTAACGGTAGAAGTGGAGGTTTTGAGAATGGGAGGGGAAGAG GGAGAGGAGGAGTTGATTCGGGGTTTAGGAGGGATGATGTTGCTGTTAAGAAGAGTCCTATAGGGAGAAGAAACTTGTTGGTTTCGGATGAGGATGAAGA CGATGAGGAAGAGGACAATGTAGCATCAATTGGAGGCTTTGATGATCTGTTGGAGGATGACAGTGATGATGATGACACTGAAGAAGACGGGGATGAGGAC GATGATGATAGTTTGTATAAGAATAGCGCGTCTTCTTTGTTGGGATTGGAAAAGAAGTACCAGGCGAAAGTGATTCCGAGTTCTACTGGAAGTTCGGAAT CTTATCTAAGTGGAACTAGATTTGACCAGTGTTCAGTATCACCACTGTCGTTGAAAGCGATCAAAGATGCTGGATACGAGAACATGACTGTGGTTCAGGA AGCAACGCTGCCTGTTATACTGAAAGGAAAGGATGTTCTAGCCAAAGCTAGAACAGGCACTGGAAAAACAGTGGCATTTCTGCTTCCATCAATTGAAGTA ATTGTGAAAACACCTCCCGCTGATCATGATAACAGAAGACCACCGATTCTTGTGCTTGTTATTTGCCCAACAAGGGAGCTCGCTATACAAGCTGCAGCAG AAGCAAACAAGCTGCTGAAGTACCATTCTTCGCTTGGTGTTCAGTGTGTCATAGGAGGCACAAGGCTTGCCCTAGAACAGAAAAAACTGCAAGCTAATCC CTGCCAGATCCTTGTTGCTACGCCGGGGAGGCTCAGAGATCATCTCGAGAATACAGCCGGATTCGCAACCAAAGTGAAAGGCGTGAAAGTTCTCGTTCTT GATGAAGCCGATCGGTTACTCGACATGGGATTCCGCAAAGACATTGACAAAATAATAGCTGCTGTTTCGAAACAACGTCAAACACTTCTGTTTTCCGCTA CAGTTCCTGACGAGGTTCGTCAAATGTGCCATGTTGCGTTGAAAAGAGACCACGAATTCATTAACACGGTTGAAGAAGGATCCGAGGAGACTCATGCAAA GGTGAGCCAGATGCATATGGTTGCTCCACTTGAGAAGCATTTTCATCTTCTCTATGCACTCCTAAGAGATCATATTGCAGACAATGTTGATTATAAGGTT CTTGTCTTTTGTACCACTGCCATGGTCACAAGACTTGTTGCAGACTGTCTTGGCGAACTCAAACTAAACATCAGAGAGATCCATTCTCGGAAGTCTCAAT CTTACAGAACCAAGGTTTCTGACGAATTCCGAAAGTCCAAGGGTCTCATACTCGTTACTTCCGACGTATCAGCACGCGGAGTCGATTATCCTGACGTTAC CCTTGTAGTACAAGTCGGGATACCATCGGACAGAGAACAATACATCCATCGACTTGGCCGAACAGGGCGCAAGGGGAAAGAAGGACAAGGAGTACTTCTG CTTGCACCTTGGGAAGAGTTCTTTCTATCTACTGTGAAAGATTTACCATTAACCAAGGCTGAGGTACCCACAATTGATCCTGACACAACCAAGAAGGTTG AGAGAGCACTGTCCAATGTGGAAATGAAGAGCAAAGAAGCAGCGTATCAAGCTTGGCTTGGTTACTACAACTCCGACAAGAAAATCGGCAAAGACAAGTA CAGGCTATACAGGCTAGAGGAGCCTTCTAATGAGTTCAGCAGGAGCATGGGACTTGACAACCCGCCTGCTATTCCGAAGATCACCCTCGGCAAGATGGGT CTCAAAAGCATCCCCGGGTTGCGCTCCAAATAG
AA sequence Show only first row Show all	>Lus10004017 pacid=23153373 polypeptide=Lus10004017 locus=Lus10004017.g ID=Lus10004017.BGIv1.0 annot-version=v1.0 MYDRRHKFREGAPPPPQRRSNGRSGGFENGRGRGRGGVDSGFRRDDVAVKKSPIGRRNLLVSDEDEDDEEEDNVASIGGFDDLLEDDSDDDDTEEDGDED DDDSLYKNSASSLLGLEKKYQAKVIPSSTGSSESYLSGTRFDQCSVSPLSLKAIKDAGYENMTVVQEATLPVILKGKDVLAKARTGTGKTVAFLLPSIEV IVKTPPADHDNRRPPILVLVICPTRELAIQAAAEANKLLKYHSSLGVQCVIGGTRLALEQKKLQANPCQILVATPGRLRDHLENTAGFATKVKGVKVLVL DEADRLLDMGFRKDIDKIIAAVSKQRQTLLFSATVPDEVRQMCHVALKRDHEFINTVEEGSEETHAKVSQMHMVAPLEKHFHLLYALLRDHIADNVDYKV LVFCTTAMVTRLVADCLGELKLNIREIHSRKSQSYRTKVSDEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGIPSDREQYIHRLGRTGRKGKEGQGVLL LAPWEEFFLSTVKDLPLTKAEVPTIDPDTTKKVERALSNVEMKSKEAAYQAWLGYYNSDKKIGKDKYRLYRLEEPSNEFSRSMGLDNPPAIPKITLGKMG LKSIPGLRSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63630			P-loop containing nucleoside t...		Lus10004017 [exp]	0	1
AT1G63680		APG13, ATMURE, ...	PIGMENT DEFECTIVE EMBRYO 316, ...		Lus10002010 [exp]	1.0	0.9681
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10017378 [exp]	1.4	0.9507
AT5G43960			Nuclear transport factor 2 (NT...		Lus10023722 [exp]	2.8	0.9440
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10042231 [exp]	3.0	0.9460
AT1G30680			toprim domain-containing prote...		Lus10023379 [exp]	4.9	0.9300
AT4G18130		PHYE	phytochrome E (.1)		Lus10004592 [exp]	7.3	0.9291
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Lus10026514 [exp]	8.0	0.9238
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10008940 [exp]	8.8	0.9331
AT5G08540			unknown protein		Lus10017363 [exp]	9.2	0.9187
AT4G23940			FtsH extracellular protease fa...		Lus10023066 [exp]	9.7	0.9341

Compare expression of checked genes

Lus10004017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.