Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61690 1060 / 0 nucleotidyltransferases (.1) AT3G51620 441 / 1e-137 PAP/OAS1 substrate-binding domain superfamily (.1.2) AT3G56320 374 / 3e-115 PAP/OAS1 substrate-binding domain superfamily (.1) AT2G40520 327 / 3e-99 Nucleotidyltransferase family protein (.1.2.3.4) AT5G53770 49 / 3e-05 Nucleotidyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030265 [exp] 2269 / 0 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10030266 [exp] 942 / 0 AT3G61690 640 / 0.0 nucleotidyltransferases (.1) Lus10030267 [exp] 872 / 0 AT3G61690 416 / 9e-131 nucleotidyltransferases (.1) Lus10004019 [exp] 679 / 0 AT3G61690 543 / 9e-176 nucleotidyltransferases (.1) Lus10022746 [exp] 443 / 2e-139 AT3G51620 659 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10025239 [exp] 440 / 6e-137 AT3G51620 689 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10006095 [exp] 436 / 1e-135 AT3G51620 686 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10042221 [exp] 356 / 1e-107 AT3G51620 424 / 8e-138 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10034219 [exp] 349 / 7e-106 AT3G56320 458 / 1e-154 PAP/OAS1 substrate-binding domain superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G097600 [exp] 1313 / 0 AT3G61690 1198 / 0.0 nucleotidyltransferases (.1) Potri.002G169732 [exp] 1300 / 0 AT3G61690 1239 / 0.0 nucleotidyltransferases (.1) Potri.015G020400 [exp] 997 / 0 AT3G61690 1025 / 0.0 nucleotidyltransferases (.1) Potri.012G000900 [exp] 969 / 0 AT3G61690 907 / 0.0 nucleotidyltransferases (.1) Potri.013G154900 [exp] 425 / 2e-131 AT3G51620 485 / 2e-159 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.019G128800 [exp] 421 / 2e-130 AT3G51620 487 / 2e-160 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.019G056800 [exp] 373 / 6e-114 AT3G56320 535 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1) Potri.011G116501 [exp] 86 / 3e-19 AT3G61690 82 / 6e-19 nucleotidyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF01909 [flax] [poplar] NTP_transf_2 Nucleotidyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10004018 pacid=23153351 polypeptide=Lus10004018 locus=Lus10004018.g ID=Lus10004018.BGIv1.0 annot-version=v1.0 ATGGGCGAGTATGAAACTGCGGAGTCACAGCCAGCAAGTGTGCTCTTGCCCAACGGGTTACTGCCTGATGAAGCAGCCTCCGTGATGCAAGTGCTTGACT CGGCCAGATGGTCGAAAGCTGAAGAGAGAACTGCTGAACTCATAGAGTGCATTAAGCCAAATGAACGTTCGGAGAATCAACGTAAGGCCGTGGCATCTTA TGTGCAGCAGCTCATTGCCAAGTGCGTTCCTTGCCAGGTTTTCACTTTCGGGTCTGTTCCGCTTAAAACTTATTTGCCAGATGGAGATATTGACTTGACA GCCTTCAGTAAGAATCAGACTTTGAAAGAGACTTGGGCTCATCAGGTTAGGGATATGTTGGAGAACGAGGAGAAGAATGAGAATGCCGAATTTTGTGTAA AGGAAGTGCAGTACATTCAGGCTGAGGTGAAACTGGTAAAGTGCCTTGTGGAGAACATCGTCGTGGATATATCGTTTAACCAGCTTGGTGGGCTATGCAC GCTCTGTTTCCTTGAAGAGGTTGATCATAAGATAGGAAATGATCATTTATTCAAGCGGAGCATTATTCTTATAAAGGCGTGGTGTTATTATGAGAGCCGT ATATTGGGTGCTCACCATGGTCTGATATCCACTTATGCGTTGGAAACTCTGGTTCTCTATATCTTTCATGTTTTCAACAATTCCTTTGCTGGACCACTTG AGGTCCTCTATCGTTTCCTTGAGTTCTTCAGTAAATTTGATTGGGATAACTTCTGTGTTAGCCTCTGGGGCCCTGTACCGATCAGTTCACTCCCAAACGT GACAGCTGAAGCACCCCGAAAGGATGATGGAGATTTACTACTCGAAAAATCATTTCTTGATGCCTGTGGCTTGGCATATGCAGTTTTTCCCAATAGTCAA GAAAATAACGGCTCCCCGTTCATCTCCAAGCACTTCAATGTCATTGATCCTTTGCGTGTTAACAACAATCTGGGTCGCAGTGTCAGCAAAGGTAACTTCT TCAGGATTCGTAGTGCATTTGCATTTGGGGCAAAGAAGCTTGCTAGGTTACTTGAATGTGACAGCGAGAACATACACGCTGAAGTGAATCAGTTTTTCCA GAATACCTGGGAAAGACATGGAAGTGGTCACCGTCCTGATGCTCCAATCAATGCTTTGGGGCAGCTGATTGGGTCAAGGAATGAGAATGTCATAAACACT TCAAATCGAGAAAGTCAAAATGATATATCACAGCATGGTAGTCGTACCTTAGAAAGCACGCCACAGAGTAGTGATATTGCTACAGCATTTCGAACACACA TTCAAACGATGAACAACTCCAGTTTGAGGATATCTGACGAGTCTAGACCAGAAATCAATTCAGATAATGGTGTTCACGCTGAAAATGGTCCTAGAACTTC TAAACCTGACAGTATGTTGAGCGGTTTACAAGGAAGGTATATATTTGCAAGGACACGCTCAAGTCCTGAGCTTACTGATACCTATAATGAAGCATCCTCA CAAACGAGACAGAATAGAGCACCAGAAGCAAAGGGTGAGGCCTCGGCAGTGATGTTGGACAGCATCAAGAGACAAAACACTGAACATGAAAAGTCATCTA GGCATGGTACTGGATCTTTAGAAGATGATCCTTCTGTTACACGCAGCTCAATGCACCAGAATCTTGATGCTGTAAGTAACTATAGTGATGATTCAGCCCT TTTTGCTGCAAGTGAGGAATTCACTTCTATCCTGGGTACACAAGGGATGTATCAGGATGTCGTGAACATGATGGCTTCTTCGAGTGGACATGGCTTTAAT GGACAAGTCCATCTTCCCCTGAATTTAGCTTCTGGTCAGATGCCCTTTCCCATACCACCTTCCGCTCTAGCTTCTATGGGATATTTTCAACGGAATTTGG GTGGAATGGTACCACCAAATACTTCATTGTTGGAGACGCATTGGGGTCCAAGTATGCAATTTCCGCAGGGTTTGTTTCCTTCTCAGTCGAATCACTTTTT TCCCACGGTAGGATTGGCATCAAGTCCAGAAGGTTCAGTTGAACATTCAGATGAGAACTTAAGTTCTTTGGAATCAAATGTTGGGGTGGCTGGCAACAAT TTCTTGCATGAACATGAAAGGGCCTCTATTGATGGTCTTGAACTTTATAATGCCAATTCCCTGATGCATCAGTCTGACGAGAAACATCAATCAAATAGTA ATCACTTCGTTCCTTTGTCTAGAACAGGTGGCTCTAGGAACTCTTCTAGTGTTCAACCAAGGGAGTCTCGACATTCAAGTAGGCGGGATCATATGGAAAC TTATCCTTACTCGGAAAACAGAGGTACCGAAGTGCTCACTGAGGAAAACCTTGCTAGCTCAAGGCCTTCGTCAAGTAATTCTTGGAGAAGTAAGCCTGCA TCTGAGAGCTCATCTGATGGATTATCTGCAAAGACAAAGACAATGAGGGAAAAGAGAGGGAGGAAGACTTCGACAGCTGTTGCTTATGGGATAGGCAGGG GAATCAATGAGAATGGCTCCCTTCACATGGATGATGACACGCAGCAGCTCTCCTCAAGCCCTGAGACTGTTGAAAGGGGCTTCGGGCCTCCGGCTCCTAG TTCTTTGCATGTTTCAAGGCATAATAATGTGCCTCGATTTGATCTGGCGCAGACAGGTGAATCTGATTCATTAGCATCCATTCCTCCGGTGCAATTAGGT CATGGTGCACGGTTTTATCCTACGGGGCCACCTGTTCCATTTGTTACGATGCTACCCATTTACAACTTCCCAACAGAGAGGGGAATTTCTGAAGCATCAA CTAGCCAGCATAGCTTTGAGGAGATCATAGATAACAATGTTCCACGTCAGAATGGTTATTCAATGAGCGTTTCGGTCATTGATGAGCCATTTGAACACAA GTTTGACATCCTCAATAGCGATTTTGCTAGTCATTGGCAGAACTTGCAATTTGGAAGGTTTTGCCAAGATCCTCCGTCGCTCTCACCGGTGACCAGTCCT TCACCGGTTGTTGTACCGCCGGTGTATTTACAGGGCCGTTTCCCATGGGAAGGTCCTGGAAGGCCCATTTCACCTAATATGAATCTTTTCTCTCAGTTGA TGGGTTTCGGGCCTCGTATCCTTCCAGTTGCTCCTGTTCCAGCTGTATCAAATAGACCTGCTGCCGTCTACCACCAGCCTTTCGTTGATGAGGTGCCTAG ATACCGCGGTGGAACTGGAACCTACCTTCCAAATCCTAATGTGGCTGTCCGAGATACTCCAAACTCGAGAAAAACAAACTATAACTTTGATAGAAGTGAC TACCATGGTGATCGGGAGGGGAACTGGAATAATTCAAAGTCGAGAGCCCCCGGGCGCAGTCAGAGTCGTAACCAGGCAGATAAGTCGAGATCTGACCGGC CATGGGTTTCACACAGACACGACACTTCCGTTACTTATCAGTCTCAAAACGGGCCAAGCCGAACAAATGCCTCTCTAGTTGGTTCTGCGGCCAATACGAA TTATGGCATGTATCCAATAACGTCTATGAATTCGAATGGACAGGTTGTCATGATGTATCCTTTTGACCAAAACGCTGCTGGTTATGTCTCTCCAGCGGAC CAGATTGAGTTTGGCTCGTTTGTTCCTCCCGGAAACTCTGGTGTAAATGATCTTAATGAGGGAAGTAGACCCGGCGAGGGATTCGAGGACCAAAGATTTC ACAGTAGTGCAGCAGTTCAACTGTCTTCCCCGGATCCGCCTTCTTCTCCTCGCTTTCAGAGCTGCGCCAAGAATCCCGAGTTGAAGGACTCGGTGGGAAT CCTACCGCTGGCTGCGGGGACCAGGTCGGTTACACATATCTCGGTTGGCCAGAACAAAGAACTTTGGTTCGATTTGATTCAGCTCTCAGATCAGCCTTCC ATGATAGCTGCCAGTTCTTGCGAATTAAGCAGAAGAAAGAGACGAAACTCGGGCGATGAGCCATTGCAGGACTTGGGTAACTAG
AA sequence Show only first row Show all	>Lus10004018 pacid=23153351 polypeptide=Lus10004018 locus=Lus10004018.g ID=Lus10004018.BGIv1.0 annot-version=v1.0 MGEYETAESQPASVLLPNGLLPDEAASVMQVLDSARWSKAEERTAELIECIKPNERSENQRKAVASYVQQLIAKCVPCQVFTFGSVPLKTYLPDGDIDLT AFSKNQTLKETWAHQVRDMLENEEKNENAEFCVKEVQYIQAEVKLVKCLVENIVVDISFNQLGGLCTLCFLEEVDHKIGNDHLFKRSIILIKAWCYYESR ILGAHHGLISTYALETLVLYIFHVFNNSFAGPLEVLYRFLEFFSKFDWDNFCVSLWGPVPISSLPNVTAEAPRKDDGDLLLEKSFLDACGLAYAVFPNSQ ENNGSPFISKHFNVIDPLRVNNNLGRSVSKGNFFRIRSAFAFGAKKLARLLECDSENIHAEVNQFFQNTWERHGSGHRPDAPINALGQLIGSRNENVINT SNRESQNDISQHGSRTLESTPQSSDIATAFRTHIQTMNNSSLRISDESRPEINSDNGVHAENGPRTSKPDSMLSGLQGRYIFARTRSSPELTDTYNEASS QTRQNRAPEAKGEASAVMLDSIKRQNTEHEKSSRHGTGSLEDDPSVTRSSMHQNLDAVSNYSDDSALFAASEEFTSILGTQGMYQDVVNMMASSSGHGFN GQVHLPLNLASGQMPFPIPPSALASMGYFQRNLGGMVPPNTSLLETHWGPSMQFPQGLFPSQSNHFFPTVGLASSPEGSVEHSDENLSSLESNVGVAGNN FLHEHERASIDGLELYNANSLMHQSDEKHQSNSNHFVPLSRTGGSRNSSSVQPRESRHSSRRDHMETYPYSENRGTEVLTEENLASSRPSSSNSWRSKPA SESSSDGLSAKTKTMREKRGRKTSTAVAYGIGRGINENGSLHMDDDTQQLSSSPETVERGFGPPAPSSLHVSRHNNVPRFDLAQTGESDSLASIPPVQLG HGARFYPTGPPVPFVTMLPIYNFPTERGISEASTSQHSFEEIIDNNVPRQNGYSMSVSVIDEPFEHKFDILNSDFASHWQNLQFGRFCQDPPSLSPVTSP SPVVVPPVYLQGRFPWEGPGRPISPNMNLFSQLMGFGPRILPVAPVPAVSNRPAAVYHQPFVDEVPRYRGGTGTYLPNPNVAVRDTPNSRKTNYNFDRSD YHGDREGNWNNSKSRAPGRSQSRNQADKSRSDRPWVSHRHDTSVTYQSQNGPSRTNASLVGSAANTNYGMYPITSMNSNGQVVMMYPFDQNAAGYVSPAD QIEFGSFVPPGNSGVNDLNEGSRPGEGFEDQRFHSSAAVQLSSPDPPSSPRFQSCAKNPELKDSVGILPLAAGTRSVTHISVGQNKELWFDLIQLSDQPS MIAASSCELSRRKRRNSGDEPLQDLGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61690			nucleotidyltransferases (.1)		Lus10004018 [exp]	0	1
AT3G22380		TIC	time for coffee (.1.2)		Lus10002448 [exp]	3.7	0.9471
AT1G27430			GYF domain-containing protein ...		Lus10003139 [exp]	4.5	0.9560
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10036354 [exp]	4.6	0.9645
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10028004 [exp]	6.2	0.9530
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10041322 [exp]	6.3	0.9521
AT3G17900			unknown protein		Lus10037215 [exp]	7.1	0.9184
AT5G22760			PHD finger family protein (.1)		Lus10020532 [exp]	8.1	0.9419
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10002974 [exp]	10.4	0.9528
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10005068 [exp]	11.5	0.9407
AT4G30100			P-loop containing nucleoside t...		Lus10020914 [exp]	11.8	0.9430

Compare expression of checked genes

Lus10004018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.