Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61690 541 / 4e-175 nucleotidyltransferases (.1) AT3G51620 412 / 1e-130 PAP/OAS1 substrate-binding domain superfamily (.1.2) AT3G56320 349 / 2e-109 PAP/OAS1 substrate-binding domain superfamily (.1) AT2G40520 304 / 1e-93 Nucleotidyltransferase family protein (.1.2.3.4) AT5G53770 48 / 3e-05 Nucleotidyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030266 [exp] 687 / 0 AT3G61690 640 / 0.0 nucleotidyltransferases (.1) Lus10030265 [exp] 685 / 0 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10004018 [exp] 678 / 0 AT3G61690 1098 / 0.0 nucleotidyltransferases (.1) Lus10030267 [exp] 555 / 0 AT3G61690 416 / 9e-131 nucleotidyltransferases (.1) Lus10022746 [exp] 411 / 2e-131 AT3G51620 659 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10025239 [exp] 408 / 3e-129 AT3G51620 689 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10006095 [exp] 402 / 7e-127 AT3G51620 686 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10042221 [exp] 344 / 2e-106 AT3G51620 424 / 8e-138 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10034219 [exp] 317 / 6e-97 AT3G56320 458 / 1e-154 PAP/OAS1 substrate-binding domain superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G097600 [exp] 596 / 0 AT3G61690 1198 / 0.0 nucleotidyltransferases (.1) Potri.002G169732 [exp] 592 / 0 AT3G61690 1239 / 0.0 nucleotidyltransferases (.1) Potri.015G020400 [exp] 582 / 0 AT3G61690 1025 / 0.0 nucleotidyltransferases (.1) Potri.012G000900 [exp] 575 / 0 AT3G61690 907 / 0.0 nucleotidyltransferases (.1) Potri.019G128800 [exp] 404 / 7e-128 AT3G51620 487 / 2e-160 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.013G154900 [exp] 403 / 2e-127 AT3G51620 485 / 2e-159 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.019G056800 [exp] 349 / 2e-108 AT3G56320 535 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1) Potri.011G116501 [exp] 86 / 2e-19 AT3G61690 82 / 6e-19 nucleotidyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF01909 [flax] [poplar] NTP_transf_2 Nucleotidyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10004019 pacid=23153343 polypeptide=Lus10004019 locus=Lus10004019.g ID=Lus10004019.BGIv1.0 annot-version=v1.0 ATGGGCGAGTATGGAATTGCGGAGTCACAGCCACCAAGTGTGCTCTTGCCTAACGGCCTACTGCCTGATGAAGCAGCCTCCATGATGCAAGTGCTTGACT CGGCCAGATGGTCGAAAGCTGAAGAGAGAACTGCTGAACTCGTAGAATGCATTAAGCCAAACGAACCCTCTGAGAACCAACGTAAGGCCGTGGCATCTTA TGTGCAGCAGCTTATTGCCAAGTGCTTTCCTTGCCAGGTCTTCACTTTTGGGTCTGTTCCGCTTAAGACTTATTTGCCAGATGGAGATATTGACTTGACA GCCTTCAGTAAGAATCAGACTTTGAAGGAGACTTGGGCTCATCAGGTTAGGGATATGTTGGAGAACGAGGAGAAGAATGAGAATGCCGAATTTCGTGTAA AAGAAGTGCAATACATTCAGGCTGAGGTGAAACTTGTGAAGTGCCTTGTGGAGAACATTGTCGTGGATATATCGTTTAACCAGCTTGGTGGGCTATGCAC ACTCTGTTTCCTTGAAGAGGTTGATCATAAGATAGGCAATGATCATTTATTCAAGCGGAGCATTATTCTTATAAAGGCATGGTGTTATTATGAGAGCCGT ATATTGGGTGCTCACCATGGTCTGATATCCACTTATGCGCTGGAAACTCTGGTTCTCTATATCTTTCATGTTTTCAACAGTTCCTTCGCTGGACCCCTTG AGGTTCTCTATCGTTTTCTTGAGTTCTTTAGTAAATTTGATTGGGACAACTTCTGTGTTAGCCTCTGGGGCCCTGTACCCATCAGTTCACTTCCAAACGT GACAGCTGAAGCGCCTCGAAAGGATGATGGAAATTTACTACTCGAAAAATCATTTCTTGATTCCTGTTGCACGGCATATGCAGTTTTTCCCAATGATCAA GAATACAATTCCACCCCGTTCATCTCCAAGCACTTCAATGTCATTGATCCTTTGCGTGTTAACAACAACCTAGGTCGCAGTGTTAGCAAAGGTAACTTCT TCAGGATCCGTAGTGCATTTGCATTTGGGGCAAAGAAGCTTGCTAGCATGCAGTTTCCTCAGAGATTGTTTCCTTCTCACTTGAACCACTATTTTCCCGC AGTAGGGTTGACAAGAAGTCCAGAAGGTTCCGTTGAACTTTCAAACAAGAATTTTGGTTCTTTGGAATCGAATCTTGGGGAGGCTGACAACGGTTTGTTG TGTGCTCATGAAAGGTCCTCGATTGATGGTCTTGAACCTGATAATGGGAGTTCCCAGATTAATCAATCTGATGATAGACAGCAATCTATCTCAGGTAGTA ATTATCACATTGTTCAATTATCTGGAGCAGGTGGCTCTGGGTACTCTTCTAGAGTTCAACCAAAGTCCTCCAGGGAGACTCGACAATCAAGCAGGCGAGA TCATGTGGAAACTTATCCTTACTCAGAAATCATAGGTGCTGAGGAAAAGCTTGCTAGCTCAAGGACTTCTTCTGCCGGGGCAAGTGATTCTGTGAGAAGT AGGCCTGCATCCGAGACTTCATGTGATGGATTATCTGCAAAGACAAAGATAGTGAGGGAAAAGCGAGGGAGGAAGACGTCGACAGCTATAGCATCTATTG TCTATGGGCAAGGTAAGGGAATCAATGAGAATGGCTCTATTCAGACGGATGATGACACAAAACTCTCATCAAGCCCCAAGACTATTGAACGGGGCTTCGG GCCGCCAGCTCCTAGTTCTTTGCATATTTCAAGGCATAATAATGTGCCTCGATTTGAAATAGTACCTACAAGTGCGTCTGATTCATTAGCACCTATTCCT CCGGTGCAATTAGGTCACGGTGCACGGTTTTATCCTACGGGGCCACCCGTTCCATTTGTTACGATGCTTCCCATTTATAACTTCCCAACAGAGGGGGGAA TTTCTGAAGCATCAACTAGCCAGCTGAGCTTTGAGGAGATCATAGATAACAATGATACCTGTCAGAATGGTAATTCAATGAGAGTTTCGGTTGTTGATGA GCCATTGAACTCAAGTCTGACATCCGTTCCTCCCGTGCAAGTTGCATCAAATCGACCTGCTATACAGCCTTTTGTTGATGAGGTGCCAAGATATCGTGGT GGAACTGGAACCTACCTTCCAAACCTTCAGAAAGTGGGAGTCCGAGATAGGCATTCCCCAAACTCCAGAAAATCGAACTACAATTTCGATAGAAGTGACT ACCATGGCGATCGGGAAGGGAACTGGAATAATTCCAAATCGAGAGCCCCTGGGCGTGGTCAGAGTCGTAACCAAACCGATAAGTCGAGTGCAAGACTTGA CAGCAGATCTGACCGGCCATGGGTTTCGCACAGACACGACACTTCCTTTACTTATCAGTCTCAAAACGGGCTGCCAGCCCGGCCAAATGCCTCTCTAGTA GGGTCTGCAGCAAATATGACTTATGGCATGTATCCAATAACGTCTACGAATTTGAATGGACAGGTTGTCATGATGTATCCTTACGACCAAAATGCTGCCG GTTATGTTTCTCCTGCGGACCAGATCGAGTTTGGCTCCCTTGGCCCTGTGGGATACTCTGGTGGTGTAAACGATCTTAACGAGGGGAGTCGTCCCGGTGG GGGATTCGAGGACCAGAGATATCAACTGTCTTCGCCGGATCAGCCTTCTTCACCTCACTTTCAGAGGTAG
AA sequence Show only first row Show all	>Lus10004019 pacid=23153343 polypeptide=Lus10004019 locus=Lus10004019.g ID=Lus10004019.BGIv1.0 annot-version=v1.0 MGEYGIAESQPPSVLLPNGLLPDEAASMMQVLDSARWSKAEERTAELVECIKPNEPSENQRKAVASYVQQLIAKCFPCQVFTFGSVPLKTYLPDGDIDLT AFSKNQTLKETWAHQVRDMLENEEKNENAEFRVKEVQYIQAEVKLVKCLVENIVVDISFNQLGGLCTLCFLEEVDHKIGNDHLFKRSIILIKAWCYYESR ILGAHHGLISTYALETLVLYIFHVFNSSFAGPLEVLYRFLEFFSKFDWDNFCVSLWGPVPISSLPNVTAEAPRKDDGNLLLEKSFLDSCCTAYAVFPNDQ EYNSTPFISKHFNVIDPLRVNNNLGRSVSKGNFFRIRSAFAFGAKKLASMQFPQRLFPSHLNHYFPAVGLTRSPEGSVELSNKNFGSLESNLGEADNGLL CAHERSSIDGLEPDNGSSQINQSDDRQQSISGSNYHIVQLSGAGGSGYSSRVQPKSSRETRQSSRRDHVETYPYSEIIGAEEKLASSRTSSAGASDSVRS RPASETSCDGLSAKTKIVREKRGRKTSTAIASIVYGQGKGINENGSIQTDDDTKLSSSPKTIERGFGPPAPSSLHISRHNNVPRFEIVPTSASDSLAPIP PVQLGHGARFYPTGPPVPFVTMLPIYNFPTEGGISEASTSQLSFEEIIDNNDTCQNGNSMRVSVVDEPLNSSLTSVPPVQVASNRPAIQPFVDEVPRYRG GTGTYLPNLQKVGVRDRHSPNSRKSNYNFDRSDYHGDREGNWNNSKSRAPGRGQSRNQTDKSSARLDSRSDRPWVSHRHDTSFTYQSQNGLPARPNASLV GSAANMTYGMYPITSTNLNGQVVMMYPYDQNAAGYVSPADQIEFGSLGPVGYSGGVNDLNEGSRPGGGFEDQRYQLSSPDQPSSPHFQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61690			nucleotidyltransferases (.1)		Lus10004019 [exp]	0	1
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Lus10006586 [exp]	1.7	0.9479
AT3G24870			Helicase/SANT-associated, DNA ...		Lus10022788 [exp]	3.0	0.9534
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10014778 [exp]	6.0	0.9531
AT3G61690			nucleotidyltransferases (.1)		Lus10030266 [exp]	7.7	0.9476
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10007206 [exp]	8.5	0.9345
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Lus10002955 [exp]	12.3	0.9053
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10038363 [exp]	12.4	0.9321
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10022224 [exp]	12.4	0.9473
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10013411 [exp]	13.2	0.9346
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Lus10002909 [exp]	13.6	0.9115

Compare expression of checked genes

Lus10004019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.