Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004020 pacid=23153362 polypeptide=Lus10004020 locus=Lus10004020.g ID=Lus10004020.BGIv1.0 annot-version=v1.0 ATGAATGGTTTAATTGTGATAAATCACGAGTATGAATTTGAGTTAGTGAGTTTACAAGCGGAGCTATCATACTTGCAAGCACACCGCAGCAGCGTGGCGA CGTGGGACGTCCTGCCTCCTCGTGATAGTGAACCAGTGGCGGCGGCGGAGATCTCCAGTCGTTGGCGCGTGAACTCCTTAGCAGAAACGGGTCGTCCCCT CCGCCGCGTCGATCTGGAGGGCACGCGATGCATTGCAACGACGGCGGGTTGTCTTCGTCGCCGTCGTCTATGTCCAAGTGATGATGACGACGTCAACCGT GTCGTGATTTGTGTAATCCTGCCGCGGAACTTGTGTAGTAGTGTAATTGGAGAGATAGAGAGGGGGTTGAGTTGGTATATTTGCATGACGGAGATCATCG CTTCTTATTATTAA
AA sequence Show only first row Show all	>Lus10004020 pacid=23153362 polypeptide=Lus10004020 locus=Lus10004020.g ID=Lus10004020.BGIv1.0 annot-version=v1.0 MNGLIVINHEYEFELVSLQAELSYLQAHRSSVATWDVLPPRDSEPVAAAEISSRWRVNSLAETGRPLRRVDLEGTRCIATTAGCLRRRRLCPSDDDDVNR VVICVILPRNLCSSVIGEIERGLSWYICMTEIIASYY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10004020 [exp]	0	1
AT5G65660			hydroxyproline-rich glycoprote...		Lus10042927 [exp]	15.3	0.7484
AT2G15220			Plant basic secretory protein ...		Lus10001360 [exp]	16.5	0.7376
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10028937 [exp]	17.4	0.7439
AT5G18930		BUD2, SAMDC4	BUSHY AND DWARF 2, Adenosylmet...		Lus10021951 [exp]	22.4	0.6870
AT5G65660			hydroxyproline-rich glycoprote...		Lus10042928 [exp]	24.3	0.7277
AT3G25710	bHLH	TMO5, BHLH32, b...	TARGET OF MONOPTEROS 5, basic ...		Lus10041493 [exp]	25.7	0.6357
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10002410 [exp]	26.2	0.7369
AT3G24535			unknown protein		Lus10023639 [exp]	30.0	0.7309
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Lus10018776 [exp]	31.8	0.7058
AT4G12410			SAUR-like auxin-responsive pro...		Lus10004337 [exp]	32.2	0.6455

Compare expression of checked genes

Lus10004020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.