Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60850 704 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030268 [exp] 1077 / 0 AT3G60850 739 / 0.0 unknown protein Lus10042598 [exp] 86 / 7e-19 AT4G35980 71 / 3e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G070200 [exp] 804 / 0 AT3G60850 843 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004021 pacid=23153352 polypeptide=Lus10004021 locus=Lus10004021.g ID=Lus10004021.BGIv1.0 annot-version=v1.0 ATGGAAGACGATCTCTTCCACAGCCACCGCCACCGTCACGATCTGGGCCTACCTCCCGCCCAGATCATAATCCCCAATCATCACCACCAACTCCTCGAAT CTCAGCCGTCCGTTCAAGAAGATCTCTACTTCCGCTCCTCTTCCCCGGACTCCCCTAGCCAATCCTCCTCCGACAACGACGCCTCCGCCTCCGCCGATCA CACCAATCCCAACGGCGACAACAGCGCCAAGAAGCAGCCGCTCTTCATCAGCCCGGAGCCGCACATCTCCTCTCAATTCTACACTTTCAACGCCGACTCC CACTCTTTAATGATCCGCTGCATCCTCGGCCACCGCCTCGCCACTCCCGACGAGATCCGCGCCGCCACTCCTCGCTCCGTCCTCAAGTCGTGGCGCGCTG TCTGGAAAGACCGCAACGAAGACACCGCTTACGTCACGGGTTGGAAGCGGATTCAGGAGAAACTCGTCGCTCAAGTCGACGAATCCGGTAACGAATTCCT TTGCTTCAAGAACAACACTCAGCAATTCGTTTCTCATGTTAATCAATGGCAAGACATCGTCATGGGATTCCACGGTGATGCCGATTTGAAACACTTAGGG CTTAGAGAAACGATTGACAGAATTAAGCAGGCCTGGACTGTAGGCGCTAAATTCTACGGAATTCCTGAGAGTTACATTAGGGTTTGTGTAGCTGCTTGCC CCGTTTGCTCCTCCGATGAAGGCTCCTCTTCCAGGAACAAACGGCGTCGCTTTGAATACACCGAATCCTTCGACGTCCCTGCTAAAGATGTACCTAATAA GCTCCACCAATTAGCTGCCAAACACAAGGTGGTACTCTGCATTAGGCAGAAGTATATCAGATATAAGCCGTTCATGGCAGAGGTTAAGGATTATGCTTGC CATAGAGCTGGTGAGCCTACAGCAAAGAAATCTAGAATGCTGAAAAGAGAGCCTTATGCTTCGAAAAGATGCGGTTGTGGATTTCGGATTAGGGCAATTG TTCCGATTGCGAATTACAACGATAAGGATAAGACGTTTGTGTATCAAGAAGAAGGAATGGCTGTGTTTAAGCTTTACGCTGTACATTCCGGTCACGAACC GGGACCATTAGATGGGAATGCGAGGATTATGCACCGAGTTGTCGGGCACAAAGGCGCCGGGTTTATGATGGATCAAGATATGGACTATGGCGAGGGATTC CAGTTTCAGCTCTCTGTGATGCAGCAGGTTGAGGAGTTGAAATCTGAGATTAGTTCGTTGGAAGGAAGGTTGAGGAAAGTTCCCTGCGAGATGCTGGGAT CGGTCTCGCAAGAATTGTTCGATGTTGTGAATAAAGTTAGGAGTATCGGGGAAGAGAATTGTTCGAAGACGATCAAGCCAAGTTCGGATGATGTTTTAGT AGGGGAGGATGATTTGACGGCTCATCATTGGGCCGATCATCATCCCGACGATGATAGCTTTGGTAGGACGCTCGGGGACGTGGTGCCTTGGAGCGAGAAG GATCTCATTAGCGATTTCGACGATGATAAGAACATACTCGAATGTGAAGATAGTAAGCTGACGAAGCGTTTGAGACACGACGAGGAAGCTATAGTGACGG ATATAGGTTTGATTCAGGTGGATAGTTTCTATCAAGATAATAGTAAGTGGTATGACTCTCCTTGTGGGCTGGATTCCGCAGCAGATTGCGAGGATAGTGA ATTCTGCCAAGGGGAGATTGCTTAA
AA sequence Show only first row Show all	>Lus10004021 pacid=23153352 polypeptide=Lus10004021 locus=Lus10004021.g ID=Lus10004021.BGIv1.0 annot-version=v1.0 MEDDLFHSHRHRHDLGLPPAQIIIPNHHHQLLESQPSVQEDLYFRSSSPDSPSQSSSDNDASASADHTNPNGDNSAKKQPLFISPEPHISSQFYTFNADS HSLMIRCILGHRLATPDEIRAATPRSVLKSWRAVWKDRNEDTAYVTGWKRIQEKLVAQVDESGNEFLCFKNNTQQFVSHVNQWQDIVMGFHGDADLKHLG LRETIDRIKQAWTVGAKFYGIPESYIRVCVAACPVCSSDEGSSSRNKRRRFEYTESFDVPAKDVPNKLHQLAAKHKVVLCIRQKYIRYKPFMAEVKDYAC HRAGEPTAKKSRMLKREPYASKRCGCGFRIRAIVPIANYNDKDKTFVYQEEGMAVFKLYAVHSGHEPGPLDGNARIMHRVVGHKGAGFMMDQDMDYGEGF QFQLSVMQQVEELKSEISSLEGRLRKVPCEMLGSVSQELFDVVNKVRSIGEENCSKTIKPSSDDVLVGEDDLTAHHWADHHPDDDSFGRTLGDVVPWSEK DLISDFDDDKNILECEDSKLTKRLRHDEEAIVTDIGLIQVDSFYQDNSKWYDSPCGLDSAADCEDSEFCQGEIA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60850			unknown protein		Lus10004021 [exp]	0	1
AT3G60850			unknown protein		Lus10030268 [exp]	1.0	0.8469
AT3G58110			unknown protein		Lus10039903 [exp]	2.0	0.8208
AT5G18110		NCBP	novel cap-binding protein (.1)		Lus10020282 [exp]	2.8	0.7583
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Lus10016361 [exp]	7.5	0.7365
AT3G58110			unknown protein		Lus10002186 [exp]	7.7	0.7444
AT5G59830			unknown protein		Lus10040857 [exp]	8.4	0.7246
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10036783 [exp]	9.8	0.7297
AT2G32910			DCD (Development and Cell Deat...		Lus10004128 [exp]	11.6	0.7667
AT5G57710			Double Clp-N motif-containing ...		Lus10015511 [exp]	15.8	0.7070
AT1G74900		OTP43	organelle transcript processin...		Lus10042307 [exp]	16.4	0.7352

Compare expression of checked genes

Lus10004021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.