Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60820 190 / 4e-61 PBF1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000062 [exp] 186 / 1e-60 AT3G60820 232 / 6e-79 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10015867 [exp] 189 / 2e-60 AT3G60820 379 / 2e-135 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10009294 [exp] 165 / 5e-47 AT1G48050 835 / 0.0 ARABIDOPSIS THALIANA KU80 HOMOLOG, Ku80 family protein (.1) Lus10030271 [exp] 86 / 2e-22 AT3G60820 82 / 3e-21 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10030272 [exp] 86 / 5e-22 AT3G60820 81 / 2e-20 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G148300 [exp] 174 / 1e-54 AT3G60820 387 / 2e-138 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Potri.014G069800 [exp] 169 / 5e-53 AT3G60820 362 / 6e-129 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF00227 [flax] [poplar] Proteasome Proteasome subunit
Representative CDS sequence Show only first row Show all	>Lus10004024 pacid=23153361 polypeptide=Lus10004024 locus=Lus10004024.g ID=Lus10004024.BGIv1.0 annot-version=v1.0 ATGACGAGCAATCATGTCGAGGAATTTTTCTCCGTACGACAACAATGGCGGGTAGTTGTTCCTTCTTGCGCCTTTCTTAATCTCCTCCTCAACTGCTTCA GTAGCGAGCCTCAACGAAATGAAAGGATTTTGCTCTCTGGCATGGTTTTGTTAATCTCTGCTAGGTCTTGCGTTGCGATTGCCGGAGCTGATTACTGTGT GATTGCTTCTGATACTCGGATGTCCATTGGCTACAATATTCTCACCAGAGATCATTCCAAAGTATACAAACTGATCAGAAATGATGATCCAGTAAGCGGC CTAGACAATGAAGGAAAGGGATGCGTTTACACATACGATGCTGTTGGTTCCTATGAGCGGGTCGGATACAGCGCCCAAGGTTCCGGTTCAGTACTCATCA TGCCTTTCCTTGACAACCAATTGAAGTCTCCAAGCCCTCTCTTATTCCCTGCACAGGATGCTGTCACTCCATTTTCTGAATCCGAAGCGATCGATTTGGT GAAAACCTGTTTCGCTTCTGCAACCGAGAGGGACATATACACCATAAGTGTCGGCGACAAGCTTGAAATAGTCGTGCTAAATGCTGACAGTATTCGTCGC GAAGTTATGCGTATGGGGTTAGACTAG
AA sequence Show only first row Show all	>Lus10004024 pacid=23153361 polypeptide=Lus10004024 locus=Lus10004024.g ID=Lus10004024.BGIv1.0 annot-version=v1.0 MTSNHVEEFFSVRQQWRVVVPSCAFLNLLLNCFSSEPQRNERILLSGMVLLISARSCVAIAGADYCVIASDTRMSIGYNILTRDHSKVYKLIRNDDPVSG LDNEGKGCVYTYDAVGSYERVGYSAQGSGSVLIMPFLDNQLKSPSPLLFPAQDAVTPFSESEAIDLVKTCFASATERDIYTISVGDKLEIVVLNADSIRR EVMRMGLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10004024 [exp]	0	1
AT2G06040			unknown protein		Lus10034779 [exp]	8.5	0.7107
AT1G31430			Pentatricopeptide repeat (PPR-...		Lus10002288 [exp]	8.5	0.7590
AT1G56290			CwfJ-like family protein (.1)		Lus10022209 [exp]	11.1	0.7863
AT2G45620			Nucleotidyltransferase family ...		Lus10015854 [exp]	12.1	0.7858
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10021351 [exp]	12.8	0.7737
AT1G67690			Zincin-like metalloproteases f...		Lus10037058 [exp]	20.1	0.7578
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	21.8	0.7639
AT1G80000			CASC3/Barentsz eIF4AIII bindin...		Lus10011468 [exp]	23.7	0.7484
AT5G66180			S-adenosyl-L-methionine-depend...		Lus10028444 [exp]	24.4	0.7531
AT2G36740		ATSWC2	sequence-specific DNA binding ...		Lus10020396 [exp]	32.7	0.7305

Compare expression of checked genes

Lus10004024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.