Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60810 160 / 4e-49 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030273 [exp] 0 / 1 AT3G60810 259 / 1e-88 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G148400 [exp] 166 / 3e-51 AT3G60810 276 / 6e-95 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07386 [flax] [poplar] DUF1499 Protein of unknown function (DUF1499)
Representative CDS sequence Show only first row Show all	>Lus10004025 pacid=23153367 polypeptide=Lus10004025 locus=Lus10004025.g ID=Lus10004025.BGIv1.0 annot-version=v1.0 ATGTCCAAGAAACGGCCCATAGGCCCAACAAAAAACTGTGATCTCTACAGCCACACGAAGAACAAGACAGCTGAACCAGAGAACCCCATCAATGGCTTCC TCTGTATGTACCTCTCACTTCAAACCACAATTCAGAAACAGATCGCAACGTCCCACCATCCTTTGCCAGCATCAGCATCAGAACAATCACCGCAGCAACG TACAAATCTCTCGACGGGCGATTATACTGAGGAGCAGCGAATTGGCTGCACTTGTGGGAAGAAGCCGGATTACTTAGGGGTTAAGAAGAACCAGATTCAA CTTGCGCTCTGCCCTGCTACTAACAACTGCATCTCCACCTCTGAGGATGTCGCCGATTCTTCACACTACGAATATGCTATTCTAAAGAATGTATATAAAT ATGCTATTCTTATGTCTGGAGATTTGATTGAATTTAAATATGTATATAAGTTATGCAACTACGCTCCTCCTTGGAAGAATCCTGTCAGCGCCCCAATTTC TATGGAGGAGCTTGTTCAAGTGATAGAATCAACAAAGCCAGACAAGCACACTGCCAAGATTGTTGAACGGAAGAGCGATTACTTACACATTGAGTACCAA AGTCCCATCTTAGGGTTGGTCGACGATGTGGAATTCTGGTTCCCCGGAGGAGGTGGGAAGTCGATCGTGGAGTATCGATCAGCTTCGAGGTTTGGAAACA TCGATTTCGATGTTAACAGAAATGAGTCAAGGTTTGGCTTTTACAATTTTTTATGA
AA sequence Show only first row Show all	>Lus10004025 pacid=23153367 polypeptide=Lus10004025 locus=Lus10004025.g ID=Lus10004025.BGIv1.0 annot-version=v1.0 MSKKRPIGPTKNCDLYSHTKNKTAEPENPINGFLCMYLSLQTTIQKQIATSHHPLPASASEQSPQQRTNLSTGDYTEEQRIGCTCGKKPDYLGVKKNQIQ LALCPATNNCISTSEDVADSSHYEYAILKNVYKYAILMSGDLIEFKYVYKLCNYAPPWKNPVSAPISMEELVQVIESTKPDKHTAKIVERKSDYLHIEYQ SPILGLVDDVEFWFPGGGGKSIVEYRSASRFGNIDFDVNRNESRFGFYNFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60810			unknown protein		Lus10004025 [exp]	0	1
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10027363 [exp]	2.6	0.9090
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10042788 [exp]	3.5	0.9062
AT2G37240			Thioredoxin superfamily protei...		Lus10019900 [exp]	5.9	0.8802
AT3G45740			hydrolase family protein / HAD...		Lus10023480 [exp]	7.7	0.8634
AT3G57030			Calcium-dependent phosphotries...		Lus10034411 [exp]	13.3	0.9088
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10023210 [exp]	13.4	0.8892
AT5G36930			Disease resistance protein (TI...		Lus10041606 [exp]	15.1	0.8397
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032216 [exp]	15.3	0.8804
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10003323 [exp]	17.0	0.8768
AT1G33100			MATE efflux family protein (.1...		Lus10005685 [exp]	18.4	0.8562

Compare expression of checked genes

Lus10004025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.