Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02390 121 / 2e-35 GST18, ATGSTZ1 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) AT2G02380 116 / 5e-33 ATGSTZ2 glutathione S-transferase (class zeta) 2 (.1) AT2G29460 44 / 1e-05 GST22, ATGSTU4 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) AT2G29420 39 / 0.0004 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) AT2G29480 39 / 0.0006 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT2G29450 38 / 0.0008 ATGSTU1, AT103-1A, ATGSTU5 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, glutathione S-transferase tau 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030274 [exp] 238 / 5e-81 AT2G02390 249 / 6e-84 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10005367 [exp] 129 / 3e-38 AT2G02390 284 / 4e-98 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10020519 [exp] 127 / 2e-37 AT2G02390 283 / 2e-97 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10005368 [exp] 39 / 6e-05 AT2G02390 72 / 8e-18 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G232600 [exp] 147 / 3e-45 AT2G02390 306 / 2e-106 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Potri.014G069600 [exp] 144 / 4e-44 AT2G02390 204 / 1e-66 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Potri.010G061301 [exp] 41 / 8e-05 AT2G29420 202 / 9e-66 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.016G104500 [exp] 40 / 9e-05 AT3G09270 196 / 2e-64 glutathione S-transferase TAU 8 (.1) Potri.010G061800 [exp] 40 / 0.0001 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.008G174900 [exp] 39 / 0.0004 AT2G29420 184 / 1e-58 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.002G254000 [exp] 39 / 0.0004 AT2G29420 167 / 1e-51 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.013G072400 [exp] 39 / 0.0006 AT3G09270 161 / 2e-49 glutathione S-transferase TAU 8 (.1) Potri.016G023340 [exp] 38 / 0.0008 AT2G29420 194 / 3e-62 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004026 pacid=23153372 polypeptide=Lus10004026 locus=Lus10004026.g ID=Lus10004026.BGIv1.0 annot-version=v1.0 ATGGACGCCGCCGAGAAAACCAATCTTCTGCCGCCGGAGAAAGAACTCCTTCTGTACTCTTACTGGCAGAGCTCCTGTTCATGGCGAGTCCGCTTCGCTC TGAAACTCAAACAGTTCAGCCCAGAGTTTGAAAGATTGAATCCACTTGGGTATGTTCCTGTGCTGGTAGATGGCGGCGTGGTTGTATCGGACTCCTTGGC TATCTTGATGTATTTGGAGGGGAAGTATCTAGAGAATCCGTTGTTGCCGGAGGATCCTCAGCTTAGAGCTCTCCATCTCCAGGCAGCAGGTGTTGTCACT TCAAGCATACAGCCTGTTCATATGCAGTCATTACTGAATTACATAGGAGAGAAATTCGGTCCGGAAGAGCGATCCTTGTGGGCCAAGACTCATATAGAAA AAGGCTTTCTTGCTCTTGAGAAGTTACTGAAAGATTCCGCGGGTTGA
AA sequence Show only first row Show all	>Lus10004026 pacid=23153372 polypeptide=Lus10004026 locus=Lus10004026.g ID=Lus10004026.BGIv1.0 annot-version=v1.0 MDAAEKTNLLPPEKELLLYSYWQSSCSWRVRFALKLKQFSPEFERLNPLGYVPVLVDGGVVVSDSLAILMYLEGKYLENPLLPEDPQLRALHLQAAGVVT SSIQPVHMQSLLNYIGEKFGPEERSLWAKTHIEKGFLALEKLLKDSAG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10004026 [exp]	0	1
AT1G34540		CYP94D1	"cytochrome P450, family 94, s...		Lus10041637 [exp]	2.0	0.9516
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10030571 [exp]	2.2	0.9469
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10037085 [exp]	3.9	0.9535
AT1G27340			Galactose oxidase/kelch repeat...		Lus10011354 [exp]	7.7	0.9179
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10041544 [exp]	8.9	0.9348
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10007630 [exp]	11.5	0.9510
AT2G44420			protein N-terminal asparagine ...		Lus10020880 [exp]	13.4	0.9462
AT2G36780			UDP-Glycosyltransferase superf...		Lus10003322 [exp]	14.6	0.9476
AT4G37410		CYP81F4	"cytochrome P450, family 81, s...		Lus10024083 [exp]	18.2	0.9402
AT3G30380			alpha/beta-Hydrolases superfam...		Lus10031953 [exp]	18.4	0.9260

Compare expression of checked genes

Lus10004026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.