Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00090 562 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G42660 61 / 2e-09 transducin family protein / WD-40 repeat family protein (.1) AT5G08390 54 / 1e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 54 / 1e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G15440 52 / 9e-07 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT1G61210 52 / 1e-06 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G49660 50 / 2e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 49 / 4e-06 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT3G21540 49 / 8e-06 transducin family protein / WD-40 repeat family protein (.1) AT5G25150 48 / 1e-05 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030275 [exp] 763 / 0 AT4G00090 608 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034648 [exp] 64 / 1e-10 AT3G42660 1083 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10021720 [exp] 62 / 7e-10 AT3G42660 1069 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10004167 [exp] 58 / 1e-08 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10043473 [exp] 54 / 2e-07 AT1G15440 1058 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10034114 [exp] 53 / 4e-07 AT1G15440 1318 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10041007 [exp] 53 / 4e-07 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 52 / 7e-07 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10021059 [exp] 50 / 2e-06 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G148100 [exp] 617 / 0 AT4G00090 577 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G069400 [exp] 613 / 0 AT4G00090 592 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G065200 [exp] 61 / 1e-09 AT3G42660 1107 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.003G060500 [exp] 58 / 1e-08 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.001G173500 [exp] 56 / 5e-08 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.008G002300 [exp] 54 / 2e-07 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 50 / 1e-06 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.016G068700 [exp] 50 / 2e-06 AT4G33270 607 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.015G087200 [exp] 50 / 3e-06 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 49 / 3e-06 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10004027 pacid=23153369 polypeptide=Lus10004027 locus=Lus10004027.g ID=Lus10004027.BGIv1.0 annot-version=v1.0 ATGGAAGCTCTACTCCCGATCGTCCTTCTCTCGCTGCTCCTCGGAGCTCTCATCGCTTTCTTCTTCTTCAAGACCTACTTCCTCAACCGCAAATCCGAAA TCCGATCCATTTCCAAGCCGGAGGACCTCCTTCCCGATCCCCCGAACAAGAAGCCCGCCAAGGCTTCCAAGAAACCCCACTCTAAACCCCACTCCCATGG CTCTGATAAGGAGCAAAATAAACGGCATCATCCGCTGGATTTGAATACGCTGAAAGGCCATGGTGATTCGGTCACTGGTGTGTGTTTCTCCCCTGATGGT CTCCATTTGGCCACTGCTTGCACTGACGGGCTGGTCCGGGTATTCAAGTTGGATGATGCTACGAGTAAGAGTTTCAAATTTCTCCGGATCAATTTACCTG CTGGTGGTCAGCCTGCTGCAGTGGTTTTCACAGACGACAAGTCCTCCGTGGTTGTCGCATCGGATGCTATGATAGGTTCTTCCCTATACATGTATGGAGA AGAGAAGGCCAAAGCTTCAAATGACGCAAAGCAGCAACCCAAGCTTCCTCTTCCAGAGATCAAATGGCAACACCAAAAAATCCATGCTGGAAAAGCTGTT ATCACCATGGTTGGGGCTGCTTCGACTTATGGTACTGGTGATGGAAGTACCATTATTGCTTCTTGCTCTGAAGGCACAGATATCAAGATCTGGCATGGAA AGACAGGGAAGCTTCTGGGTGAGGTTGATACGAACCAGTTGAAGAATACCATGGCTACTTTATCGCCAAATGGACGATTCATTGCTGCCGCAGCTTTTAC TGCTGATGTGAAGGTCTGGGAGATTGTCTATGCAAAGGATGGCTCTGTCAGGGAAGTAGTAAATGTAATGCAACTGAAAGGCCACAAGAGTGCAGTAACG TGGTTGTGTTTTACCCCCAACTCGGAGCAAATAATCACAGCATCAAAAGATGGGTCGATCCGCACTTGGAACATCAACGTCCGATATCATATGGATGAAG ATCCAAAGACTCTAAAAGTGTTCCCGATCACATCTCACGACTCCAAGGGCGCTACTTTCCAATACCACCATCTCAGCATCTCTCCAGATGGCAAGACACT GGTGGCCACACATGGTTCTACATTGCAGTGGTTATCCGCAGAAACAGGAGAGGTTTTGGACACAGCTGAAAAGGCCCATGATGGTGATATCACTTGGATT TCCTGGTCGCCAAAGCCTATTCCACAAGGTGGCAAACTGGGTTTGGTTCTAGCAACTTCTGGTGTGGACAAGAAAGTGAAGCTGTGGGCAGCTCCATCAG TGAAGTAG
AA sequence Show only first row Show all	>Lus10004027 pacid=23153369 polypeptide=Lus10004027 locus=Lus10004027.g ID=Lus10004027.BGIv1.0 annot-version=v1.0 MEALLPIVLLSLLLGALIAFFFFKTYFLNRKSEIRSISKPEDLLPDPPNKKPAKASKKPHSKPHSHGSDKEQNKRHHPLDLNTLKGHGDSVTGVCFSPDG LHLATACTDGLVRVFKLDDATSKSFKFLRINLPAGGQPAAVVFTDDKSSVVVASDAMIGSSLYMYGEEKAKASNDAKQQPKLPLPEIKWQHQKIHAGKAV ITMVGAASTYGTGDGSTIIASCSEGTDIKIWHGKTGKLLGEVDTNQLKNTMATLSPNGRFIAAAAFTADVKVWEIVYAKDGSVREVVNVMQLKGHKSAVT WLCFTPNSEQIITASKDGSIRTWNINVRYHMDEDPKTLKVFPITSHDSKGATFQYHHLSISPDGKTLVATHGSTLQWLSAETGEVLDTAEKAHDGDITWI SWSPKPIPQGGKLGLVLATSGVDKKVKLWAAPSVK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00090			Transducin/WD40 repeat-like su...		Lus10004027 [exp]	0	1
AT1G76400			Ribophorin I (.1)		Lus10016038 [exp]	6.6	0.8280
AT2G19450		RDS1, DGAT1, AT...	TRIACYLGLYCEROL BIOSYNTHESIS D...		Lus10021582 [exp]	6.6	0.8164
AT4G18030			S-adenosyl-L-methionine-depend...		Lus10003014 [exp]	12.2	0.8161
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10032510 [exp]	12.4	0.7980
AT1G45207			Remorin family protein (.2)		Lus10009750 [exp]	16.8	0.8134
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10029902 [exp]	22.4	0.8160
AT1G76400			Ribophorin I (.1)		Lus10025159 [exp]	22.8	0.8070
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Lus10035162 [exp]	23.8	0.7764
AT2G26730			Leucine-rich repeat protein ki...		Lus10033065 [exp]	24.0	0.8100
AT1G21870		GONST5	golgi nucleotide sugar transpo...		Lus10025645 [exp]	25.5	0.8039

Compare expression of checked genes

Lus10004027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.