Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45400 290 / 3e-96 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G42800 277 / 5e-91 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT4G35420 224 / 2e-71 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G61720 207 / 2e-64 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27250 204 / 7e-63 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G68540 201 / 2e-62 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G02400 196 / 4e-60 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G25460 182 / 5e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 176 / 1e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 174 / 6e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030276 [exp] 328 / 2e-113 AT2G45400 158 / 5e-47 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004029 [exp] 310 / 2e-104 AT2G45400 283 / 7e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041031 [exp] 278 / 1e-91 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10004030 [exp] 253 / 4e-82 AT2G45400 267 / 2e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020072 [exp] 216 / 2e-67 AT1G61720 404 / 2e-141 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 197 / 2e-60 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035016 [exp] 196 / 4e-60 AT1G68540 468 / 2e-167 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10021294 [exp] 194 / 1e-58 AT4G27250 351 / 4e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006141 [exp] 190 / 5e-58 AT4G35420 484 / 2e-173 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G147702 [exp] 397 / 3e-139 AT2G45400 317 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G148000 [exp] 385 / 3e-134 AT2G45400 320 / 4e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G087200 [exp] 376 / 1e-130 AT2G45400 317 / 6e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147701 [exp] 342 / 2e-117 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147601 [exp] 340 / 2e-116 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147800 [exp] 335 / 1e-114 AT2G45400 313 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147400 [exp] 334 / 3e-114 AT2G45400 344 / 7e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147500 [exp] 334 / 5e-114 AT2G45400 311 / 8e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147600 [exp] 324 / 3e-110 AT2G45400 345 / 5e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147602 [exp] 322 / 2e-109 AT2G45400 324 / 6e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10004028 pacid=23153349 polypeptide=Lus10004028 locus=Lus10004028.g ID=Lus10004028.BGIv1.0 annot-version=v1.0 ATGGCGGAAGGATCTGGAGATCAAAAGGGAAGAAACACAGTAGTCTACTGTGTGACCGGCGGCACTGGATTCCTCGGCTCATGGCTGGTCAAGACCCTTC TTGACCACGGATACTCTGTCCACGCCACCGTCAGACCTCACAGGGGAGTCGGCGACGGCAACTTAACGTTCCTGACGGAGCTCCCCGGAGCAAAGGATAG ACTAAAGATCTTCGAGGCGGACCTGAACGACCCGGAGAGCTTCTCGGCCGCAATCCGCGGCTGCTCGGGAGTCTTCCACGTGGCGACTCCGATGGACTTC GAGAGAAAGGAGACTGTCGAAGAAATCGTGAGGCGGTCTGTGGAAGGTGCGCTCGGGATAGTGAAAGCATGCATGCAGGAAAAGGTGAAGCGAGTCGTTT ACACGTCAAGTGCATCAACGGTGAGCATCAACGGCCATGATGTGGAGGTGATGGACGAGAGTTACTGGACTGATGTGGAGTACGTCAAGGCGTTGGATTC GAACATGGGATCTTATGTGATTTCGAAGACTTTGACTGAACGGAAGGTGACGGAGTTTGCGGAGGAAAATGGGCTGGAGTTGGTTACCGTTAACCCCACT TTCGTTGTGGGTCCCTTCGTTTGTCCCAAGTTTCCTGGTTCCGTCAAGACTACTTTCAGCCTCGTCCTTGGTACATTTGCGGACAAAAATCAATACCCTA TTCAAAAGAATATATCAATGGTGCATGTTGACGATGTAGTCAGAGCACATATTTTTCTGATGGAAAACCCACAAACTACTAAAGGAAGATTCATTTGCTC TTCTCATATTATTACTCTGGACCAGATGCATCAACTTCTTAGCACCAAATACCAAGAACTCCCTCTTCCAACTCTCGAGTCTTTAAAGGAGTACGTTAAG GGTCCCAAAGAGCCTGGATTCTCATCAAAGAAGCTAATGGATGCTGGCTTCGAGTTCAAATATGGACTTGAAGATATCTTCGATGATGCGATTCAATGTT GTAAACAAAAGGGTTACCTGTAA
AA sequence Show only first row Show all	>Lus10004028 pacid=23153349 polypeptide=Lus10004028 locus=Lus10004028.g ID=Lus10004028.BGIv1.0 annot-version=v1.0 MAEGSGDQKGRNTVVYCVTGGTGFLGSWLVKTLLDHGYSVHATVRPHRGVGDGNLTFLTELPGAKDRLKIFEADLNDPESFSAAIRGCSGVFHVATPMDF ERKETVEEIVRRSVEGALGIVKACMQEKVKRVVYTSSASTVSINGHDVEVMDESYWTDVEYVKALDSNMGSYVISKTLTERKVTEFAEENGLELVTVNPT FVVGPFVCPKFPGSVKTTFSLVLGTFADKNQYPIQKNISMVHVDDVVRAHIFLMENPQTTKGRFICSSHIITLDQMHQLLSTKYQELPLPTLESLKEYVK GPKEPGFSSKKLMDAGFEFKYGLEDIFDDAIQCCKQKGYL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Lus10004028 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10041078 [exp]	3.9	0.8990
AT5G67140			F-box/RNI-like superfamily pro...		Lus10024178 [exp]	5.0	0.8292
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10024661 [exp]	10.2	0.8434
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10022904 [exp]	12.4	0.8763
AT4G19420			Pectinacetylesterase family pr...		Lus10035682 [exp]	17.5	0.8927
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10018686 [exp]	18.8	0.8387
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10018084 [exp]	23.5	0.8685
AT3G07350			Protein of unknown function (D...		Lus10002335 [exp]	27.3	0.8579
AT4G19420			Pectinacetylesterase family pr...		Lus10037269 [exp]	29.0	0.8779
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10022467 [exp]	32.8	0.8275

Compare expression of checked genes

Lus10004028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.