Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45400 251 / 4e-81 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G42800 219 / 1e-68 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT4G35420 182 / 4e-55 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT4G27250 165 / 6e-48 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G19440 159 / 6e-46 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G61720 158 / 2e-45 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 158 / 3e-45 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 155 / 1e-44 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 154 / 4e-44 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 153 / 9e-44 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004028 [exp] 293 / 1e-97 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004030 [exp] 221 / 7e-70 AT2G45400 267 / 2e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041031 [exp] 216 / 1e-67 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10030276 [exp] 177 / 2e-54 AT2G45400 158 / 5e-47 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006141 [exp] 179 / 1e-53 AT4G35420 484 / 2e-173 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Lus10030277 [exp] 165 / 2e-51 AT2G45400 89 / 1e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 166 / 2e-48 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 163 / 2e-47 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020072 [exp] 163 / 3e-47 AT1G61720 404 / 2e-141 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G148000 [exp] 304 / 2e-102 AT2G45400 320 / 4e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147702 [exp] 297 / 1e-99 AT2G45400 317 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G087200 [exp] 296 / 3e-99 AT2G45400 317 / 6e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147500 [exp] 285 / 6e-95 AT2G45400 311 / 8e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147800 [exp] 285 / 8e-95 AT2G45400 313 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147400 [exp] 275 / 5e-91 AT2G45400 344 / 7e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147701 [exp] 272 / 5e-90 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147601 [exp] 269 / 1e-88 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147600 [exp] 266 / 1e-87 AT2G45400 345 / 5e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147602 [exp] 261 / 1e-85 AT2G45400 324 / 6e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10004029 pacid=23153374 polypeptide=Lus10004029 locus=Lus10004029.g ID=Lus10004029.BGIv1.0 annot-version=v1.0 ATGGAAACGGAAGAACCAAAGGGTCCGGTTTGCGTCAGCGGAGCAACAGGCTTCATAGCTTCATGGCTGATCAAGAAGCTCCTACACCATAACTACCCTG TTCACGCCACCATCCGATCACATAACAACACAGACACTACCACCTTCTTAACAAGCCTCCCTGGAGCGTCGGAGAATCTCCGCCTCTTCGAAGCCGACCT GTCCCACCCCGACAGCTTCTCCGCCGCCATTCGAGGCTGCGCCGCCGTCATTCACGTGGCTACTCCAGATGCAGATCACTCTCGTGATGAAGAAGAAGAA ACCGTCGTGGAAAGATCGGTCAGCGGAACACTAGGGATACTGAAGGCATGCGGCGAGTCCAAGACGGTGAAGCGTGTGGTGTACACTTCCGGCGCGTCAG CAGTGATGTATTGCGACGGTGGTAGTCTCGAAGATGTTGAGACGGTGGACGAGAGCTTTTGGAGCGACGTGGAGTATGGAAGAACGGTGATGTCGGATAA GAGCGATGCAGCGAGGTTGATCAGAATGGTTTCGAAGACGGTGACGGAGAGGAAAGCGATTGAGTTTGCGGAAGCGCGTGGGATTGACCTCGTCACGTTG ATTCCTTCCTTTGTTGTGGGCCCTTTCGTTTGCTCTAAGCTTCCTCTGTCTGTCCGGTTTGCACTTGCGACGGTTCATGGGCAGAAGATCAATGCTACCG GAATGCTCGAGTCGCCGATCCCAGTGGTGCATGTTGACGATGTAGCCGAAGCATACATCTTCCTGCTGAGAACCCCACAAGCAAAAGGGAGGTTTATATG TTCTTCACATAACCTTACGAGATTTGATCAGATCAGAAGCCTTTCTATCAAGTACCCTAACTTGACGATTCCAGCAGTAAGAGCAAGGTCTGTAAAAGAT CATAAAAAGCCCAAGCTTTCATCGAAGAAACTATTGGACGCTGGGTTTGAATTCAAGTATGGCATTGAGGATATGTTCGAGGGGGCAATTCAATGCTGTA TTGACAAAGGATTTCTCTAA
AA sequence Show only first row Show all	>Lus10004029 pacid=23153374 polypeptide=Lus10004029 locus=Lus10004029.g ID=Lus10004029.BGIv1.0 annot-version=v1.0 METEEPKGPVCVSGATGFIASWLIKKLLHHNYPVHATIRSHNNTDTTTFLTSLPGASENLRLFEADLSHPDSFSAAIRGCAAVIHVATPDADHSRDEEEE TVVERSVSGTLGILKACGESKTVKRVVYTSGASAVMYCDGGSLEDVETVDESFWSDVEYGRTVMSDKSDAARLIRMVSKTVTERKAIEFAEARGIDLVTL IPSFVVGPFVCSKLPLSVRFALATVHGQKINATGMLESPIPVVHVDDVAEAYIFLLRTPQAKGRFICSSHNLTRFDQIRSLSIKYPNLTIPAVRARSVKD HKKPKLSSKKLLDAGFEFKYGIEDMFEGAIQCCIDKGFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Lus10004029 [exp]	0	1
					Lus10016514 [exp]	1.7	0.7689
AT4G17905		ATL4H	RING/U-box superfamily protein...		Lus10024405 [exp]	2.4	0.7641
AT1G63320			Pentatricopeptide repeat (PPR)...		Lus10009331 [exp]	4.5	0.7187
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10015195 [exp]	13.4	0.6368
AT4G31050			Biotin/lipoate A/B protein lig...		Lus10008181 [exp]	14.3	0.6651
					Lus10011908 [exp]	16.9	0.6882
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10020867 [exp]	18.0	0.6839
					Lus10033430 [exp]	26.8	0.5999
AT5G48540			receptor-like protein kinase-r...		Lus10006752 [exp]	30.7	0.6612
AT2G15220			Plant basic secretory protein ...		Lus10014107 [exp]	33.6	0.6522

Compare expression of checked genes

Lus10004029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.