Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45400 268 / 1e-87 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G42800 216 / 4e-67 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT4G35420 186 / 2e-56 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT4G27250 174 / 2e-51 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G51410 167 / 3e-49 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G61720 167 / 5e-49 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 162 / 3e-47 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 161 / 8e-47 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 159 / 6e-46 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 156 / 7e-45 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004028 [exp] 254 / 1e-82 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004029 [exp] 233 / 2e-74 AT2G45400 283 / 7e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041031 [exp] 218 / 3e-68 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10008668 [exp] 176 / 3e-52 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 169 / 1e-49 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020072 [exp] 169 / 2e-49 AT1G61720 404 / 2e-141 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 167 / 5e-49 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 163 / 1e-47 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006141 [exp] 162 / 3e-47 AT4G35420 484 / 2e-173 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G147800 [exp] 316 / 7e-107 AT2G45400 313 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147500 [exp] 315 / 9e-107 AT2G45400 311 / 8e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147701 [exp] 303 / 3e-102 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147601 [exp] 302 / 1e-101 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147400 [exp] 301 / 4e-101 AT2G45400 344 / 7e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147600 [exp] 298 / 4e-100 AT2G45400 345 / 5e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147602 [exp] 293 / 6e-98 AT2G45400 324 / 6e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G087200 [exp] 290 / 5e-97 AT2G45400 317 / 6e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G148000 [exp] 286 / 3e-95 AT2G45400 320 / 4e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147702 [exp] 284 / 2e-94 AT2G45400 317 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10004030 pacid=23153368 polypeptide=Lus10004030 locus=Lus10004030.g ID=Lus10004030.BGIv1.0 annot-version=v1.0 ATGGCGGAAAACATAGGAATAGTATGCGTAACTGGTGGGACAGGCTTCATAGCTTCCAGTCTCATCATGACACTCCTCCACCGCGGCTACACCGTCCATA CTACACTCCGATCAAAAAACGGTGACCAACTTCTTCCTCCTCTTCTTCCCTTTGTCTTTTTGTCAACTAATCCAAATCTTCTGTATCAAAGGGCGGGTAA AAGGGACATAAGCTACCTCACAAACTTACCAGGAGCGGAGGAGAGGCTCTGCATATTCGAGGCCGACCTGGAGGAACCGACCACCTTCGTGTCGGCGTTC CAAGGATGCAGGGGAGTGTTCCACCTGGCACATCCGAGGGAGTCGACATTGGAAAAAGCCGTGGAAGCAACAATTGGGGTTCTAAGAGCCTGCGTTGACT CGAAGACGGTTAAGAGAGTGATTTTCACTTCTAGCTTGGGCGCCGCGGCGCCCAACGCCCCCAACAGGTCGGATCATGTGGACGAGAGTACATGGACTGA CGTGGAGGGGTTGAGAAATGATGAGGTCGGATTCAAGACGTTGTCGGTTAAAACGGTGACGGAGAAAGTGGCCTTGGATTTCGCTCGACGGAATGGAATG GACTTGGTGACACTGCTTCCGGCAGTGGTCGTCGGATCTTTCATCTCTCCGGCCCTTCCGACGTCTGTCAAGCTGGCGCTCAACCTTGTTTTTGGAGACA AGGATCTAATTAATCAAATGCCATTGGTGGACATAGAAGACGTGGTTAGAGCACACATTTTCGTAATGGAAAGTGTTGATGCAAAAGGGAGATATATATG TTCCTCCATTAATGTTTCATTGCTTGAGATGTGGGAATTTCTTTCTACTAAATACCCACTTCTTCATTTACCCTTGAAGGACACTGTGGAGAATATACGA AGCGACATCATTGTGAGAGCGTCGTCCAAGAAGCTATTGGACATGGGGTTTGAATTCAAGAATGGCCTTGGTCATATGGTTGATGGAGCAATCCAATCTT GTAAAGAGAGAGGCTTAATCTGA
AA sequence Show only first row Show all	>Lus10004030 pacid=23153368 polypeptide=Lus10004030 locus=Lus10004030.g ID=Lus10004030.BGIv1.0 annot-version=v1.0 MAENIGIVCVTGGTGFIASSLIMTLLHRGYTVHTTLRSKNGDQLLPPLLPFVFLSTNPNLLYQRAGKRDISYLTNLPGAEERLCIFEADLEEPTTFVSAF QGCRGVFHLAHPRESTLEKAVEATIGVLRACVDSKTVKRVIFTSSLGAAAPNAPNRSDHVDESTWTDVEGLRNDEVGFKTLSVKTVTEKVALDFARRNGM DLVTLLPAVVVGSFISPALPTSVKLALNLVFGDKDLINQMPLVDIEDVVRAHIFVMESVDAKGRYICSSINVSLLEMWEFLSTKYPLLHLPLKDTVENIR SDIIVRASSKKLLDMGFEFKNGLGHMVDGAIQSCKERGLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Lus10004030 [exp]	0	1

Compare expression of checked genes

Lus10004030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.