Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12240 763 / 0 ATBETAFRUCT4, VAC-INV VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) AT1G62660 752 / 0 Glycosyl hydrolases family 32 protein (.1) AT3G13790 458 / 2e-154 ATCWINV1, ATBFRUCT1 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) AT1G55120 444 / 8e-149 ATFRUCT5, ATCWINV3 6-fructan exohydrolase, beta-fructofuranosidase 5 (.1.2.3) AT2G36190 432 / 3e-144 ATCWINV4 cell wall invertase 4 (.1) AT5G11920 427 / 1e-142 ATCWINV6 6-&1-fructan exohydrolase (.1.2) AT3G52600 426 / 1e-141 ATCWINV2 cell wall invertase 2 (.1.2) AT3G13784 403 / 3e-133 ATCWINV5 cell wall invertase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030278 [exp] 894 / 0 AT1G62660 562 / 0.0 Glycosyl hydrolases family 32 protein (.1) Lus10028922 [exp] 835 / 0 AT1G12240 832 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10004340 [exp] 830 / 0 AT1G12240 833 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10024605 [exp] 800 / 0 AT1G12240 805 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10032242 [exp] 790 / 0 AT1G62660 800 / 0.0 Glycosyl hydrolases family 32 protein (.1) Lus10031144 [exp] 713 / 0 AT1G12240 729 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10037633 [exp] 457 / 6e-154 AT3G13790 704 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10014219 [exp] 449 / 9e-151 AT2G36190 711 / 0.0 cell wall invertase 4 (.1) Lus10008392 [exp] 444 / 7e-149 AT3G13790 756 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G112600 [exp] 868 / 0 AT1G12240 882 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.003G126300 [exp] 806 / 0 AT1G12240 819 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.015G127100 [exp] 695 / 0 AT1G62660 712 / 0.0 Glycosyl hydrolases family 32 protein (.1) Potri.006G227500 [exp] 471 / 1e-159 AT3G13790 660 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G227400 [exp] 465 / 3e-157 AT3G13790 703 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G210600 [exp] 463 / 3e-156 AT3G52600 770 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077400 [exp] 456 / 1e-153 AT3G52600 755 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077500 [exp] 452 / 6e-152 AT3G52600 751 / 0.0 cell wall invertase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF08244 [flax] [poplar] Glyco_hydro_32C Glycosyl hydrolases family 32 C terminal CL0143 [flax] [poplar] B_Fructosidase PF00251 [flax] [poplar] Glyco_hydro_32N Glycosyl hydrolases family 32 N-terminal domain CL0143 [flax] [poplar] PF11837 [flax] [poplar] DUF3357 Domain of unknown function (DUF3357)
Representative CDS sequence Show only first row Show all	>Lus10004031 pacid=23153344 polypeptide=Lus10004031 locus=Lus10004031.g ID=Lus10004031.BGIv1.0 annot-version=v1.0 ATGGCTGACCAACGCACACCAATCCTTCCTGTAGCGGATCCTGACTACATCCCCATCCCAGATGACTCTACCAGCCCGGGTCGGTTCTCCACCCGAAACC GGTCCAAGAAGCTTCTTCTGTTTTCCCTGTTTTGTGGGGTGGCCCTGGTTTGGCTAATAATGGGGAACGGATCCGACCACTCGGTCGACATTGCCCACAC ACCATCCACCGCTACTAAAACGACCTCGCGTGGGAAGCTTGAGGGCGTGTCGGAGAAATCCAACGGTCAACGGTCGTTGTTCAGGGACCATGACTGGGAG AATAAAACGTTGTCGTGGCAGAGGACAGCGTTCCATTTCCAATCGGAGAAGAACTGGATGAACGATCCCAACGGACCCTTGTACTACAAAGGTTGGTACC ACTTCTTTTACCAGTACAACCCGTTTAGCGCAGTCTGGGGTGACATCGCGTGGGGTCATGCCGTGTCCAAGGACTTGGTCCGTTGGGTTCACCTTCCGTT AGCGATGGTCCCAGATCAATGGTATGATGTCAATGGTGTCTGGACAGGATCGGCCACGATCCTCCCAGACGGTAAGATCGTGATGCTGTATACCGGTTCT ACAAACGATTCAGTTCAGGTTCAGTGCCTAGCCTACCCGGCTAACCACGACGACCCGTTGTTACTCGATTGGGTCAAGTACTCGGGGAACCCAGTCTTGG TCCCGCCACCAGGGATCGGAATAAAGGATTTTCGAGACCCCACCACGGCTTGGATGACTTCGGAAGGGAAATGGAGGATAACCGTCGGATCTAAGATCCA CAGGACCGGCATTGCTCTGGTTTACGATACAGAGGATTTCATACATTACGAGCAGAAGAATGAGACCCTACACGGTGTTTCGGGTACTGGAATGTGGGAA TGTGTTGACTTTTACCCCGTTTCGATGACCGGTTCGGATGGGTTGGATACATCCACCAACGGTCCGGATGTGAAGCATGTGATGAAGGCAAGCCTTGACG ACGATCGACATGACTACTACGCATTGGGGATCTATGACGATCAGACAGGGAAATGGACTCCTGACAATTCTGAAATCGACGTTGGGATAGGGATCAGGTA CGATTATGGCGTATTTTACGCTTCGAAGACGTTCTACGACGAGAGCAAGAAGAGGAGAGTTCTATGGGGTTGGGTTGGGGAGTCTGATAGTGAATTTTCT GATGTTAAGAAAGGATGGGCATGCCTTCAAGGGTTTCCAAGGACAGTTTCCATGGACATCAAAACTAAAACCAACTTGATCCAATGGCCGGTAGAAGAGA TCGAGACTCTAAGGCGAGGAAAACGAGAGTTCAACGAAATCGGACTCAATCCGGGATCAATTCTCCAGCTCGGAATCGACGATGGATCTCAGCTAGACAT CGTCGCAGAGTTCGAGCTAGACAAGGAGGCAGTGAATTGGAGCAGCACAGCTGAATTGGCCGATTTCAACTGTGCTGACAGTAAAGGTGCGGCCCAACGA GGCGCATTGGGCCCATTCGGACTACTAGTACTGACGGAGGAGACTCTAACCGAGCAAACTCCGGTGTACTTCTACGTGACGAAGGGGAGGAACGAAACGT TGACCACTTTCTTTTGTGTTGACCAGTCAAGGTCCTCTTTGGCAACTGATGTTAGCAAGGTGATCCATGGGAGCTATGTTCCTACCCTGGAAGGTGAGAA GATTTCGGTTCGGGTTTTGGTCGACCATTCGATTGTCGAGAGCTTTGTTCAAGGCGGGAGGTCCGTGATCACAGCTAGGGTTTATCCGACAATGGCGATC TACGGGAGTGCCAAGGTGTTCCTGTTCAACAATGCTACAGAGGCTGCTGTTAAGGCTTCTGTTCAGGTCTGGGAAATGGGTTCGGCTTATGAACCGGTTT CTGATTCGGTCAGAAGTGGGCCGAGATTAGGCTTTGTTGTTTTCTTTTACATGCTTTGTTATTTAGCACTCAAGTTTTATTGA
AA sequence Show only first row Show all	>Lus10004031 pacid=23153344 polypeptide=Lus10004031 locus=Lus10004031.g ID=Lus10004031.BGIv1.0 annot-version=v1.0 MADQRTPILPVADPDYIPIPDDSTSPGRFSTRNRSKKLLLFSLFCGVALVWLIMGNGSDHSVDIAHTPSTATKTTSRGKLEGVSEKSNGQRSLFRDHDWE NKTLSWQRTAFHFQSEKNWMNDPNGPLYYKGWYHFFYQYNPFSAVWGDIAWGHAVSKDLVRWVHLPLAMVPDQWYDVNGVWTGSATILPDGKIVMLYTGS TNDSVQVQCLAYPANHDDPLLLDWVKYSGNPVLVPPPGIGIKDFRDPTTAWMTSEGKWRITVGSKIHRTGIALVYDTEDFIHYEQKNETLHGVSGTGMWE CVDFYPVSMTGSDGLDTSTNGPDVKHVMKASLDDDRHDYYALGIYDDQTGKWTPDNSEIDVGIGIRYDYGVFYASKTFYDESKKRRVLWGWVGESDSEFS DVKKGWACLQGFPRTVSMDIKTKTNLIQWPVEEIETLRRGKREFNEIGLNPGSILQLGIDDGSQLDIVAEFELDKEAVNWSSTAELADFNCADSKGAAQR GALGPFGLLVLTEETLTEQTPVYFYVTKGRNETLTTFFCVDQSRSSLATDVSKVIHGSYVPTLEGEKISVRVLVDHSIVESFVQGGRSVITARVYPTMAI YGSAKVFLFNNATEAAVKASVQVWEMGSAYEPVSDSVRSGPRLGFVVFFYMLCYLALKFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10004031 [exp]	0	1
AT1G15170			MATE efflux family protein (.1...		Lus10004899 [exp]	1.4	0.7280
AT5G50170			C2 calcium/lipid-binding and G...		Lus10015665 [exp]	4.9	0.7186
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10030188 [exp]	12.1	0.7260
AT3G44220			Late embryogenesis abundant (L...		Lus10005214 [exp]	16.0	0.7070
AT5G50960		ATNBP35, NBP35	nucleotide binding protein 35 ...		Lus10036588 [exp]	17.7	0.6640
AT1G64600			methyltransferases;copper ion ...		Lus10017311 [exp]	20.4	0.6494
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10021213 [exp]	21.8	0.6960
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10028003 [exp]	23.0	0.6869
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	24.4	0.6901
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	26.3	0.6901

Compare expression of checked genes

Lus10004031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.