Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45340 724 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G51560 688 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G22730 604 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G25560 222 / 2e-63 NIK2 NSP-interacting kinase 2 (.1.2.3) AT5G62710 218 / 5e-62 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 213 / 4e-58 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G60800 206 / 1e-57 NIK3 NSP-interacting kinase 3 (.1) AT4G20140 210 / 4e-57 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G30520 201 / 9e-56 SARK SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) AT1G67510 202 / 1e-55 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030279 [exp] 1115 / 0 AT2G45340 648 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031703 [exp] 659 / 0 AT5G51560 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031123 [exp] 657 / 0 AT5G51560 855 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004333 [exp] 597 / 0 AT4G22730 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10028916 [exp] 582 / 0 AT4G22730 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015484 [exp] 223 / 1e-63 AT2G23950 910 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033104 [exp] 219 / 2e-62 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036672 [exp] 217 / 1e-61 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019963 [exp] 216 / 1e-60 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G068700 [exp] 794 / 0 AT2G45340 831 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G147000 [exp] 787 / 0 AT2G45340 808 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G130100 [exp] 694 / 0 AT5G51560 940 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G128700 [exp] 661 / 0 AT5G51560 906 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G117800 [exp] 612 / 0 AT4G22730 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G115100 [exp] 593 / 0 AT4G22730 788 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G071100 [exp] 223 / 5e-64 AT5G62710 943 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G110300 [exp] 221 / 3e-63 AT3G25560 918 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.017G108000 [exp] 220 / 1e-62 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.019G058600 [exp] 223 / 1e-61 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004032 pacid=23153365 polypeptide=Lus10004032 locus=Lus10004032.g ID=Lus10004032.BGIv1.0 annot-version=v1.0 ATGCACACTCATCATCTCTTCCTCCTCATCCTCCTCTCATACCCCACCGTTTCAATTTCATCCGACCTCGACATCCTCATGGAAATCAAGACCTCCCTCG ACCCAACGGATCAGCTCTTGACCTCATGGACCCCCAACGCCGACCCATGTTCCTTCGAAGGAGTCGCCTGTAACGAAAACGGTGGCGTAGCCAACATTTC CCTCCAAGGAAAGGGCCTCGCCGGCCACATACCTCCGGCGATTGGTGGGTTGACCAGTCTTACTGGGTTGTACCTACATTTCAATTCGTTGACCGGTGGG ATCCCTGTCGAGATTTCCCAGCTCACTCAGCTTCAAGATTTGTATCTCAATGTCAATAATCTCTCCGGTGATATTCCTCCTCAGCTGTCCAACTTGTCAA ATCTTCAAGTTTTGCAGCTGTGTTACAACAAGCTGAGTGGGAGCATACCAAACCAGCTAGGATCTCTAATGAAGCTTGGTGTACTTGCTCTTCAGTTCAA TAACTTGACTGGTGCAATCCCAGCAAGCTTGGGGGATTTGTATCAGTTGACTAGGTTGGATTTAGGCTTCAATTCCCTCTTTGGTTCCATCCCTGTCAAG TTAGCCAATGCTCCTTTGCTCCAATTCTTCGACATCCGTAACAACACCCTCTCCGGAAATGTCCGTCCAGCTCTGGTGAGGCTTGGAAATGGCTTCCAAT ATGACCACAACCAAGATCTATGCGGAGCCGAGTTTCGAAACTTGGCTCCGTGCAGAGTCTACCAGCAATTCTATCCCATTGTTAGCAGCAAACCGAACGC CGCCATGCCCAATTCTCCCATCCCGGAATCTGCAAACTTACCTCCGGAATGTTCGCCTCCTACCCCACAATCTGCAACGAACAAAAAACCACACTTTGAT CACTATGGGATCATACTAGGCCTAGTCGGATGCTTCGTTTCCCTTGCTTCGATAATCGTTCTCGTGATATTATGGTGGCATCGCAGGCGAAAGCAGAAGA TCGGTAGTGTAGCTACCTATGCTTCTGATGATCGCCTCATTACCACAGACAACCAAGGGAAGGAAATTGTCAGCAAGAACAACACGAAGAATGGAACCTC GCCACTTCTTAGCATCGAGTATCCAACCGGTTGGGATCCATTAGGCAATACTAGCAACGATTCGGTTTCTCAGGAGTTCCTAGAGAGTTTGATGTTCAAC TTGGAAGAAGTCGAACGAGCAACACAGCATTTCTCGGAGGGGAATCTATTGGGGAAGAGCCGTGGGGGATTCTCAGCTACTTATAAGGGTGTTTTACGAG ATGGGTCGGTGGTGGCGATCAAGTGCATTGCGAAAACCAGCTGCAAAGCGGATGAAGCCGAGTTCTTGAAGGGTTTGAAAGTGTTGGGATCTTTGAAGCA TGAAGGGTTGGTGAAGTTGAGAGGGTTTTGCTGCTCAAAGGGGAGAGGGGAGTGCTTTCTCATCTATGATTTTGTTACTAATGGAAACTTGTTACAGTAC CTTGATCTCAACAAGGAAGGAGGAACAAGTGATGAGACGATGCTTCTTGAATGGTCCACCAGAGTTTCCATCATCAGTGGAATTGCCAAAGGAATTGCAT ATTTGCATGGACAAAAAAGTGGAAGCAAGCAAGGTCTAGTTCATCAAAACATATCAGCTAAGAAGGTGATGATTGACAGCCAGTACAATCCACTGCTATC GGATTCCGGCCTGCACATGCTTCTAGCCGATGATGTCGTGTTCTCGATCCTAAAAGCCAGTGCCGGCATGGGGTATCTCTTCCCCGAGTACACGAACACT GGCCGGTTCACGGAGAAGAGCGATGTTTACGCGTTCGGAGTAGTAACGCTGCAGATCATTACCGGAAAGAGCAACGTTACTCACCTCACTCGCCATGCAT TCGATCCGTCGTCATCATCATCATCGCACGAGGTGGAACACATTGTCGACCGGAATCTCGGTGGGAGTTTTGAGGAATGGGAGGCGAATCAGCTGGTGAA AATGGCTCTACTTTGCACTCATGAAGCTCCTAGCCAGAGGCCGAAGATGGAAGATTTGGTTAGGGAAGTTGGTGAGCTTGTTGCTACTCCTTAA
AA sequence Show only first row Show all	>Lus10004032 pacid=23153365 polypeptide=Lus10004032 locus=Lus10004032.g ID=Lus10004032.BGIv1.0 annot-version=v1.0 MHTHHLFLLILLSYPTVSISSDLDILMEIKTSLDPTDQLLTSWTPNADPCSFEGVACNENGGVANISLQGKGLAGHIPPAIGGLTSLTGLYLHFNSLTGG IPVEISQLTQLQDLYLNVNNLSGDIPPQLSNLSNLQVLQLCYNKLSGSIPNQLGSLMKLGVLALQFNNLTGAIPASLGDLYQLTRLDLGFNSLFGSIPVK LANAPLLQFFDIRNNTLSGNVRPALVRLGNGFQYDHNQDLCGAEFRNLAPCRVYQQFYPIVSSKPNAAMPNSPIPESANLPPECSPPTPQSATNKKPHFD HYGIILGLVGCFVSLASIIVLVILWWHRRRKQKIGSVATYASDDRLITTDNQGKEIVSKNNTKNGTSPLLSIEYPTGWDPLGNTSNDSVSQEFLESLMFN LEEVERATQHFSEGNLLGKSRGGFSATYKGVLRDGSVVAIKCIAKTSCKADEAEFLKGLKVLGSLKHEGLVKLRGFCCSKGRGECFLIYDFVTNGNLLQY LDLNKEGGTSDETMLLEWSTRVSIISGIAKGIAYLHGQKSGSKQGLVHQNISAKKVMIDSQYNPLLSDSGLHMLLADDVVFSILKASAGMGYLFPEYTNT GRFTEKSDVYAFGVVTLQIITGKSNVTHLTRHAFDPSSSSSSHEVEHIVDRNLGGSFEEWEANQLVKMALLCTHEAPSQRPKMEDLVREVGELVATP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45340			Leucine-rich repeat protein ki...		Lus10004032 [exp]	0	1
AT1G67040			unknown protein		Lus10033565 [exp]	3.7	0.9442
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10026619 [exp]	7.1	0.9312
AT5G51560			Leucine-rich repeat protein ki...		Lus10031123 [exp]	7.4	0.9272
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Lus10005931 [exp]	7.7	0.9284
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10032528 [exp]	7.9	0.9375
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10023028 [exp]	9.0	0.9245
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10024105 [exp]	11.0	0.9186
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10019042 [exp]	11.3	0.9245
AT2G05760			Xanthine/uracil permease famil...		Lus10030014 [exp]	17.1	0.9195
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Lus10013125 [exp]	18.0	0.9174

Compare expression of checked genes

Lus10004032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.