Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020808 [exp] 287 / 4e-96 ND / Lus10002735 [exp] 53 / 1e-08 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0345 [flax] [poplar] Aerolisin_ETX PF01117 [flax] [poplar] Aerolysin Aerolysin toxin
Representative CDS sequence Show only first row Show all	>Lus10004033 pacid=23156720 polypeptide=Lus10004033 locus=Lus10004033.g ID=Lus10004033.BGIv1.0 annot-version=v1.0 ATGAAGATAATAGAGCGCACTCCGGTGGCCGTTTTGACCAAGAACGTTATCAACGGGTCTAAGGTATCCACTCAAGAGGCACACCTGGCGTTCAGGTACT CGGAGTACCAGAGCAACTATTGGGAGACGACACACTCGTGGCAGGTAGGGGTATCATATGGTGTGACTTCCACTGTATCTGCTCGGCTTCCAGTGCTCAA GTTCATCCGAGCGGAGACAACAGTGAGCCTGGAGGTGGAAGCAGGATATCAGGGAGAGCATGTGGCAGGGGAGACGAAAGTGGAGGAGAGCGAGATGTCG ACGAGCTTCACACTACAGGTGCCGCCTAGAACCCAGTCTCTTGTCCACATGACTGTGTCTAGGGCCATGATCCAGCTTCCCTTCACCTACACTGAGCGCG AGATGCGTCATGATGGTACCACTGCCGCCGTCAAGAAGGTCGACGGACTTTATGAAGGTGAAGCCACCCATGTCGACTATCAAGTCGAAGAAAGCAGCCT GTAA
AA sequence Show only first row Show all	>Lus10004033 pacid=23156720 polypeptide=Lus10004033 locus=Lus10004033.g ID=Lus10004033.BGIv1.0 annot-version=v1.0 MKIIERTPVAVLTKNVINGSKVSTQEAHLAFRYSEYQSNYWETTHSWQVGVSYGVTSTVSARLPVLKFIRAETTVSLEVEAGYQGEHVAGETKVEESEMS TSFTLQVPPRTQSLVHMTVSRAMIQLPFTYTEREMRHDGTTAAVKKVDGLYEGEATHVDYQVEESSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10004033 [exp]	0	1
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10020381 [exp]	16.5	0.6561
AT1G11340			S-locus lectin protein kinase ...		Lus10030765 [exp]	50.0	0.6085
AT1G10522			unknown protein		Lus10030652 [exp]	64.6	0.5771
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10016907 [exp]	91.0	0.5660
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10028100 [exp]	91.7	0.5500
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022927 [exp]	97.0	0.5642
AT3G51520			diacylglycerol acyltransferase...		Lus10039136 [exp]	100.6	0.5596

Compare expression of checked genes

Lus10004033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.