Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53040 65 / 1e-11 GRD, RKD4 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) AT1G74480 65 / 1e-11 AtRKD2, RKD2 RWP-RK domain containing 2, RWP-RK domain-containing protein (.1) AT5G16100 65 / 3e-11 unknown protein AT1G18790 61 / 3e-10 AtRKD1, RKD1 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) AT4G35590 60 / 1e-09 RKD5 RWP-RK domain-containing 5, RWP-RK domain-containing protein (.1) AT5G66990 58 / 3e-09 RKD3 RWP-RK domain-containing 3, RWP-RK domain-containing protein (.1) AT4G24020 57 / 1e-08 NLP7 NIN like protein 7 (.1) AT1G20640 57 / 2e-08 NLP4 Plant regulator RWP-RK family protein (.1.2) AT1G76350 56 / 3e-08 NLP5 Plant regulator RWP-RK family protein (.1) AT3G59580 56 / 4e-08 NLP9 Plant regulator RWP-RK family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020810 [exp] 367 / 7e-127 AT5G16100 61 / 2e-10 unknown protein Lus10019100 [exp] 63 / 1e-10 AT1G18790 149 / 2e-43 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) Lus10035008 [exp] 60 / 8e-10 AT1G18790 145 / 6e-42 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) Lus10034456 [exp] 60 / 1e-09 AT1G18790 157 / 9e-46 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) Lus10005921 [exp] 58 / 4e-09 AT5G53040 143 / 2e-41 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) Lus10030744 [exp] 59 / 6e-09 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2) Lus10013224 [exp] 58 / 7e-09 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10014429 [exp] 56 / 2e-08 AT1G20640 132 / 7e-34 Plant regulator RWP-RK family protein (.1.2) Lus10023931 [exp] 56 / 2e-08 AT2G17150 164 / 6e-45 Plant regulator RWP-RK family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G223100 [exp] 198 / 1e-59 AT5G16100 72 / 7e-14 unknown protein Potri.015G011800 [exp] 62 / 1e-10 AT5G53040 137 / 1e-39 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) Potri.012G016800 [exp] 61 / 2e-10 AT5G53040 138 / 8e-40 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) Potri.005G101000 [exp] 59 / 2e-09 AT4G35590 273 / 5e-90 RWP-RK domain-containing 5, RWP-RK domain-containing protein (.1) Potri.001G087900 [exp] 58 / 8e-09 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.007G133400 [exp] 56 / 3e-08 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.017G018500 [exp] 56 / 5e-08 AT2G43500 811 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.002G009700 [exp] 55 / 6e-08 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.009G166666 [exp] 55 / 7e-08 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G087500 [exp] 54 / 9e-08 AT4G35270 301 / 5e-92 Plant regulator RWP-RK family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [flax] [poplar] RWP-RK RWP-RK domain
Representative CDS sequence Show only first row Show all	>Lus10004035 pacid=23156719 polypeptide=Lus10004035 locus=Lus10004035.g ID=Lus10004035.BGIv1.0 annot-version=v1.0 ATGGATTCCAATCAAATAGTACCGACCCAAGGCGAAAACCCACACGAACTTGACACCGATGCAATCGAGAGGTTTCTCAAGAGTCCTGATCGCATATATC CCACTGTAAATAACTCGGGACTTGAGATCGAACTTGCTTCGGACCCTACACAAACAAGCGTAGTTGATGTTCCTGACCCTGACGATCCCATGACATGGAA TATTGATTTCTGCTTAGAGTTTGCAGACCAAATAATACCATGTCAGGGAACAACCACCATGGGCGTGGGTCAGTCTGGATCAGTTTCCGATTCCGGCGAC CAGTGTAAGGAAAATGCTCCGGCGGGATTGGGTTCATCGTCAGATTATGAAACACAGAGGCAGTACTATTACTACTATGAAGATACGTCAATTCCTGAAG GGGAAATGGAAACAGGACAAGTTCCTACAGTCAGCGTCAATGCCAATATGTTGAATGCAGCGCTTCCACGGCCTTTCAACTGCAGTTCCTGTCAAGTTTT GAGAGAAATCGTCCACTCAGATGGTGGGAGGATAACCACCAAACTTGAGATCCATGGGAGTGTGGGCATGATTTTCCATGCTGTTCTAGAGAGCCACCAA TATTTCACAGATCGCCCACTGGAGTCTTACTTCCAAACTTTCGATTTTACCAGCAAAAGCTTGGAGGAAGTAAAGCATTTGACCAAGGAATATTGTATTG GGAGAGAAAGAGATGGGTTCTTCATGGAACAAGATAACTACTCGAAATTCTATGAAGCTTTGTGCGTTGGATATGACTGGAATGACATTCTGGAAGTCCA TTCTCCCACTGGCTCTGCAGAAGAACAGCAGCCACAGCAGCAGCCACTGCAGGAAGAAACCGAGGGAGAGAAACAAGACAGGAGCCATCTTTCCATACAG AGGGAGAGAGCAGCAAAGTTGAAGGTGAAGGATTTAGCGGAGTATTTCGATTATCCTATCCAAAAGGCGTCGGTGATGCTGAATTTGTGTTCCACTGTTC TCAAGAGGAAATGCCGTCAAGAGGGAGTTCGACGTTGGCCTCATAGGAAGGTGAAAAGTCTGAAGAAGCAAATGGAGAAGGTGAGAAAATTCATGCACTC AAATAATCACAGCGTGGAGGAATATGCACGACTGCAAGGATCACTTGAAAATCTCCAGCAGCAGTTGGATGTCATTGTCACTAGGGGATATTGA
AA sequence Show only first row Show all	>Lus10004035 pacid=23156719 polypeptide=Lus10004035 locus=Lus10004035.g ID=Lus10004035.BGIv1.0 annot-version=v1.0 MDSNQIVPTQGENPHELDTDAIERFLKSPDRIYPTVNNSGLEIELASDPTQTSVVDVPDPDDPMTWNIDFCLEFADQIIPCQGTTTMGVGQSGSVSDSGD QCKENAPAGLGSSSDYETQRQYYYYYEDTSIPEGEMETGQVPTVSVNANMLNAALPRPFNCSSCQVLREIVHSDGGRITTKLEIHGSVGMIFHAVLESHQ YFTDRPLESYFQTFDFTSKSLEEVKHLTKEYCIGRERDGFFMEQDNYSKFYEALCVGYDWNDILEVHSPTGSAEEQQPQQQPLQEETEGEKQDRSHLSIQ RERAAKLKVKDLAEYFDYPIQKASVMLNLCSTVLKRKCRQEGVRRWPHRKVKSLKKQMEKVRKFMHSNNHSVEEYARLQGSLENLQQQLDVIVTRGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16100			unknown protein		Lus10004035 [exp]	0	1
AT5G03050			unknown protein		Lus10012904 [exp]	1.7	0.7402
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030461 [exp]	2.4	0.7095
AT4G25040			Uncharacterised protein family...		Lus10043192 [exp]	2.4	0.6637
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10007595 [exp]	9.3	0.7027
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10031978 [exp]	13.8	0.6638
AT1G23980			RING/U-box superfamily protein...		Lus10022223 [exp]	17.0	0.5931
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Lus10025585 [exp]	17.9	0.6386
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10001863 [exp]	18.3	0.6763
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10005468 [exp]	20.7	0.6128
					Lus10033763 [exp]	21.4	0.6161

Compare expression of checked genes

Lus10004035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.