Plant FIBer expression Database

Lus10004036 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G37590 347 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020811
[exp]
623 / 0 AT5G37590 405 / 2e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G085200
[exp]
349 / 8e-116 AT5G37590 530 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10004036 pacid=23156746 polypeptide=Lus10004036 locus=Lus10004036.g ID=Lus10004036.BGIv1.0 annot-version=v1.0
ATGAGCTCTTTGAAATTATCGGATGGTTATATCAATGGGAAGGGGAAAAAGTCAGTGAGACGAAGAGATGGTGCAGCGATGAGGATGAAGAGATCGAAAC
CGTCGCTTCCCAATCTCGATTCTCTTAGTTATTTTGGAAGGAGTAACAGAGCCAATGAATTTGGATTTGGCGGTTCAACTTGGAGGAGGAATGACAATCG
TTCTCTTCCATGGATTATTGCTGCTGGACAAGCAGCATTTTTCATCGGGACTGATGGAAACTCTGTACTAGCGGATGCCTCTGTAGAGAGCAATCCTAAA
ACCGAGTTGGAAGAGACTGGCGAAATTGGTTTGCAGAAAACTGACGGTGGTTCCATAGTTTCAAATATACATACTTCTAAGTGGAGAGTTTTTACAGACA
GTGGACGAGATTTTTTCCTTCAGGCAGGCATCTTTTCTGTTGCTCCTTCTGCTCTTGGGAAATTGGACTATGCAGAAAAGCTCTTCATTTCTGCATTGAA
TGAAGCCAAAGAAGGTTTTGGAGAGAAAGATCCCCATGTTCCATACGCATGCAATAATTTGGTTAAGAAGGAGTTCAATAAAGCAGAACCTTTGTATTTG
AGGGCCATAAATGTACTGGAAACATTTGGTCCTGAAGACGTACGTGCGGCTCTTCACAACTTGGGGCAATTCTATCTTGTGCAGCGGAAACTGGAACAAG
CCTGTAAATGCTACGAGATCAAGGGTCGTGTTCTTGGATTTAATAATCCAGACTATGCAGACACAATGTATCATCTTGGGACGGTGAGGTTTCTTATGGG
TAAACAAGTGGATGCTGAAGTTCTCATCCAGGATTCCACTAGGATAGCAGAGGACAGTGGACAAGGGGAATCGGCTATATGTATAAGGAGATTGCGTTAT
CTAGCTCAGATATATTTGAAGTCCAACCGTCTTGTGGAAGCTGAAAATGTACAGAGAAAGGTTCTGCATATATGGAATTGTCACAGGGGTTTATTTCCAT
TTTCAAGAGATAGAAGGCTCAGAAAGAGCCTGCCGCTTGCTTATTCCGTCAAATTTGATGTCGATCTCATGCAACAGGGATGGAAATCTATGGACACTTT
GATGACAGCTCAAGGGCTAGTCCAGACCCTACTGTCCGCTGGGAACTTCAGTGATGCACAAGAACTTCTTGAAATGTGCCTCGATGGTCAGAAAAGCTTA
CTTTCCGAGGACCATATTCAGGTTCGATGCCCGTTTTAA
AA sequence
>Lus10004036 pacid=23156746 polypeptide=Lus10004036 locus=Lus10004036.g ID=Lus10004036.BGIv1.0 annot-version=v1.0
MSSLKLSDGYINGKGKKSVRRRDGAAMRMKRSKPSLPNLDSLSYFGRSNRANEFGFGGSTWRRNDNRSLPWIIAAGQAAFFIGTDGNSVLADASVESNPK
TELEETGEIGLQKTDGGSIVSNIHTSKWRVFTDSGRDFFLQAGIFSVAPSALGKLDYAEKLFISALNEAKEGFGEKDPHVPYACNNLVKKEFNKAEPLYL
RAINVLETFGPEDVRAALHNLGQFYLVQRKLEQACKCYEIKGRVLGFNNPDYADTMYHLGTVRFLMGKQVDAEVLIQDSTRIAEDSGQGESAICIRRLRY
LAQIYLKSNRLVEAENVQRKVLHIWNCHRGLFPFSRDRRLRKSLPLAYSVKFDVDLMQQGWKSMDTLMTAQGLVQTLLSAGNFSDAQELLEMCLDGQKSL
LSEDHIQVRCPF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G37590 Tetratricopeptide repeat (TPR)... Lus10004036
[exp]
0 1
AT4G00490 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2... Lus10030392
[exp]
3.9 0.7746
AT5G19485 transferases;nucleotidyltransf... Lus10026802
[exp]
9.8 0.7247
AT3G61415 ASK21 SKP1-like 21 (.1.2) Lus10036365
[exp]
15.7 0.7464
AT2G36110 Polynucleotidyl transferase, r... Lus10029479
[exp]
16.2 0.7097
AT3G47840 Tetratricopeptide repeat (TPR)... Lus10019098
[exp]
19.4 0.6516
AT5G09300 Thiamin diphosphate-binding fo... Lus10033480
[exp]
21.2 0.6514
AT5G51140 Pseudouridine synthase family ... Lus10016743
[exp]
21.9 0.7205
AT2G45730 eukaryotic initiation factor 3... Lus10034521
[exp]
31.5 0.7098
AT1G67120 ATPases;nucleotide binding;ATP... Lus10037616
[exp]
31.6 0.7133
AT3G12660 FLA14 FASCICLIN-like arabinogalactan... Lus10000415
[exp]
32.6 0.6151

Lus10004036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.