Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37600 639 / 0 ATGLN1;1, GLN1;1, ATGSR1 ,GSR 1 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1) AT1G66200 637 / 0 ATGSR2, GLN1;2 glutamine synthetase 1;2, glutamine synthase clone F11 (.1.2.3) AT5G16570 627 / 0 GLN1;4 glutamine synthetase 1;4 (.1) AT3G17820 605 / 0 GLN1;3, GLN1.3, ATGSKB6 GLUTAMINE SYNTHETASE 1;3, ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE KB6, glutamine synthetase 1.3 (.1) AT1G48470 570 / 0 GLN1;5 glutamine synthetase 1;5 (.1) AT5G35630 564 / 0 ATGSL1, GLN2, GS2 GLUTAMINE SYNTHETASE LIKE 1, glutamine synthetase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020812 [exp] 696 / 0 AT5G37600 672 / 0.0 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1) Lus10010203 [exp] 611 / 0 AT5G37600 655 / 0.0 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1) Lus10017404 [exp] 596 / 0 AT5G37600 642 / 0.0 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1) Lus10012536 [exp] 576 / 0 AT5G37600 599 / 0.0 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1) Lus10034016 [exp] 571 / 0 AT5G35630 748 / 0.0 GLUTAMINE SYNTHETASE LIKE 1, glutamine synthetase 2 (.1.2.3) Lus10001115 [exp] 568 / 0 AT5G35630 701 / 0.0 GLUTAMINE SYNTHETASE LIKE 1, glutamine synthetase 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G131100 [exp] 647 / 0 AT1G66200 600 / 0.0 glutamine synthetase 1;2, glutamine synthase clone F11 (.1.2.3) Potri.004G085400 [exp] 644 / 0 AT1G66200 593 / 0.0 glutamine synthetase 1;2, glutamine synthase clone F11 (.1.2.3) Potri.007G069600 [exp] 635 / 0 AT5G37600 653 / 0.0 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1) Potri.012G043900 [exp] 632 / 0 AT5G37600 600 / 0.0 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1) Potri.015G034700 [exp] 632 / 0 AT5G37600 632 / 0.0 ARABIDOPSIS THALIANA GLUTAMINE SYNTHASE CLONE R1, ARABIDOPSIS GLUTAMINE SYNTHASE 1;1, glutamine synthase clone R1 (.1) Potri.005G093200 [exp] 627 / 0 AT1G66200 647 / 0.0 glutamine synthetase 1;2, glutamine synthase clone F11 (.1.2.3) Potri.010G029100 [exp] 570 / 0 AT5G35630 711 / 0.0 GLUTAMINE SYNTHETASE LIKE 1, glutamine synthetase 2 (.1.2.3) Potri.008G200100 [exp] 569 / 0 AT5G35630 704 / 0.0 GLUTAMINE SYNTHETASE LIKE 1, glutamine synthetase 2 (.1.2.3) Potri.017G127901 [exp] 103 / 3e-27 AT1G66200 106 / 2e-28 glutamine synthetase 1;2, glutamine synthase clone F11 (.1.2.3) Potri.017G138201 [exp] 0 / 1 AT1G66200 0 / 1 glutamine synthetase 1;2, glutamine synthase clone F11 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03951 [flax] [poplar] Gln-synt_N Glutamine synthetase, beta-Grasp domain CL0286 [flax] [poplar] GCS PF00120 [flax] [poplar] Gln-synt_C Glutamine synthetase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10004037 pacid=23156715 polypeptide=Lus10004037 locus=Lus10004037.g ID=Lus10004037.BGIv1.0 annot-version=v1.0 ATGTCTCTTCTTACAGATCTAGTAAACCTCGACCTTTCCGACTCCACCGAGAAGATCATTGCTGAGTACATATGGGTTGGCGGGTCTGGCATGGACCTGA GAAGCAAAGCAAGGACACTTTCCGGACCTGTGAGCGATCCTTCCAAGCTGCCGAAGTGGAACTACGACGGTTCTAGCACCGGCCAGGCTCCCGGAAAAGA CAGTGAAGTCATCCTCTATCCGCAGGCGATCTTCAAGGACCCGTTCAGGAGAGGGAACAACATCCTGGTGATGTGCGACACTTACACGCCAGCCGGAGAC GCGATTCCGACGAACAAGAGATGTGCGGCGGCGAAGGTGTTCAGCAACCCTGAAGTGGAAGCAGAGGAGCCGTGGTTTGGGATCGAACAGGAGTACACTC TGCTTCAGAAGGATGTGAAGTGGCCCCTCGGCTGGCCCATCGGAGGCTACCCCGGACCTCAGGGGCCATACTACTGTGCGGTGGGAGCTGACAAGGCGTT TGGAAGGGACGTTGTGGATTCACACTACAAGGCCTGCCTTTATGCCGGCATCAATATCAGTGGAATCAATGGCGAAGTCATGCCTGGCCAGTGGGAATTC CAAGTTGGGCCGTCAGTGGGGATTTCTGCTGGCGATGAAGTATGGGTGGCTCGTTACATTCTGGAGAGGATCACAGAGATTGCTGGAGTTGTGCTTTCCT TTGACCCTAAGCCAATTCAGGGCGATTGGAATGGAGCTGGTGCACACACAAACTACAGCACCAAGTCAATGAGGAAAGATGGAGGCTACGAAGTGATCAA GAAGGCCATAGAGAAGCTGGGGCTCAAGCACGCAGAGCACATCGCTGCTTACGGCGAAGGCAACGACCGTCGCCTCACCGGCCGCCACGAAACCGCCGAC ATCAACACCTTCTTATGGGGAGTTGCGAACAGGGGAGCATCGATTCGAGTGGGGAGGGAGACGGAGAAGGAAGGGAAAGGGTACTTTGAAGACAGGAGGC CAGCTTCCAACATGGATCCTTACGTTGTCACCTCCATGATTGCTGAGACCACCCTTCTCTGGAAGCCATGA
AA sequence Show only first row Show all	>Lus10004037 pacid=23156715 polypeptide=Lus10004037 locus=Lus10004037.g ID=Lus10004037.BGIv1.0 annot-version=v1.0 MSLLTDLVNLDLSDSTEKIIAEYIWVGGSGMDLRSKARTLSGPVSDPSKLPKWNYDGSSTGQAPGKDSEVILYPQAIFKDPFRRGNNILVMCDTYTPAGD AIPTNKRCAAAKVFSNPEVEAEEPWFGIEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCAVGADKAFGRDVVDSHYKACLYAGINISGINGEVMPGQWEF QVGPSVGISAGDEVWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRKDGGYEVIKKAIEKLGLKHAEHIAAYGEGNDRRLTGRHETAD INTFLWGVANRGASIRVGRETEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10004037 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10019183 [exp]	13.8	0.8662
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10041190 [exp]	16.1	0.8401
AT4G12545			Bifunctional inhibitor/lipid-t...		Lus10024624 [exp]	17.4	0.8421
AT4G16260			Glycosyl hydrolase superfamily...		Lus10016883 [exp]	23.7	0.8439
AT5G44390			FAD-binding Berberine family p...		Lus10008410 [exp]	28.8	0.8348
AT2G03240			EXS (ERD1/XPR1/SYG1) family pr...		Lus10026622 [exp]	37.8	0.7915
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10037209 [exp]	45.4	0.8294
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10019462 [exp]	47.7	0.8283
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Lus10008579 [exp]	50.5	0.7948
AT1G66120			AMP-dependent synthetase and l...		Lus10031366 [exp]	54.6	0.8202

Compare expression of checked genes

Lus10004037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.