Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37630 1001 / 0 EMB2656 EMBRYO DEFECTIVE 2656, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020813 [exp] 1723 / 0 AT5G37630 1087 / 0.0 EMBRYO DEFECTIVE 2656, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G085500 [exp] 1248 / 0 AT5G37630 1050 / 0.0 EMBRYO DEFECTIVE 2656, ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004038 pacid=23156709 polypeptide=Lus10004038 locus=Lus10004038.g ID=Lus10004038.BGIv1.0 annot-version=v1.0 ATGGAGGCCAACGACGAAGAGAGGATGCAACTTTGCCGTAAAATCGCCAAAATCTTTGACGAAACAAAGACATCAAACGCCACTCACATCAGAAAGCTGA AGGACCTCTCTTCCGTTCTGTCAAAGTCCCCGTCACCTCGCCAGTTCGCGGCTGCATTCTGCAGGACTTTGACTCCTCTCTTCTGCATCCAGCGCCGGAC TTCCTCCGCCGAGCGCGTTGTCAGGTTTGTCTCCGGCTTTGCTGGCGCCCAAGCGTCGGGTCGAGACTCCGGCTGCGATGAATTTCTCGAGGAGTTGCTC AGGTTTTTGCTAACTGCTTCTGCTGCCGCCAATAAGACCGTCAGGTTTAGGGCCTGTCAGATGATTTCTGAGATAATTATGCGGCTGCCTGATGATGCCG AAGTAAGTGATGATGTATGGGATGAGGTGATTGAATGTATGATGTTGCGCGTTCGAGATAAGGCTTCTGTTATTCGTACGTTTGCTGTTAGAGCTCTTTC CAGATTTGCAAACGATGCTGAGAATAGTGACATCCTTAATTTGCTTCTGGAAGTGCTTGAACTGGAGCAAAGTGCAGAAGTTCGTAAAACAATTCTGTTA GCTTTGCCTCCTACAAATGCAACCTCTCTTGTGATTGTTGATTGCACCTTAGATGTGAGTGAATCAGTTCGCAAAGCTGCATACTGTGTTCTTGCTAACA AATTTCCACTGCATAGTCTCAGCATTAAGCTGAGGACACTGATTCTTCAAAGAGGACTTGCTGATCGTTCCATCATTGTTTCAAAGGAGTGCCTAAAGCT GTTGAGAGATGAGTGGCTTTCTAAGTGCTGCTATAGTGATCCTATAGAACTTTTAAAGTATTTGGATGTTGAGACTTATGAGTTGGTTGGGGAAGCTGTG ATGGATGCTTTGTTGAAAGAAGGTTCAATTATAATTGATAATCAGAGCATCCAAGAGTACATTGTATCTACCGCTGGTGAAAATGAAGATTCACCTCCAA ATATTCAGTTGATGGAACCAGAGTCGGCTCTTTATTGGAAAACTGTGTGCAGGTTCTTACAGAGCAAGGCACAAGCAAAAGGCTCTGATGCTGCTGTAAC AACGGGTACTGAAGCTGCAGTTTATGCCGCTGAGGCTTCAGACAGTAATGACCTTCTCGACAGAATACTTCCAGCTACAGTTTTTGATTATGTAGCTCTG GTCAAAGCTCATATAGATGCTGGACCAAACTACCGTTTTGCATCTCGACAGCTGCTGCTACTTGGTGCCATGGTGGATTTTTCTGATTCCACATGCAGAA AGGTAGCTAGTGCTTTCCTTCAAAACCTGTTGCAGAGGCCCTTAGATTTTGAAACTGATGAGACTGGAAACGAAGTCGTCATTGGAGATGGCTTAAGCCT GGGTGGTGAAAAAGATTGGGCTGACGCCGTAACCAGCTTGGCAAAACAAGTTCATTCTGGAATTGGAGATATTGAAAGTGCTTTTCTTGTGGTTCTAGAA GAACTTGTCAGGCCTTGCCGGGAGAGGACAGCTGATTTTAAGCAGTGGATGCATTGCCTTTCTGTCACAGGTCTTCTTTTGCAAAATACAAAGTCGTTTC ACCTGCTTCAAGGACAAGCTATCCAACCATCTGAATTGCTGCAGTCTTTGTTACTCCCCGCGGCAAAACATGTTCACTTAGATGTACAGAGGGTTTCTAT TCGATGCCTTGGTCTTTTTGGCTTGTTAGAGAAGAAGCCAAGTGAAGATGTAGTGAAGCAGTTAAGGGTTTCCTTTATAAGGGGTCCTTCTCATATCAGT GCAATGGCATGCAAAGCTCTAATGGACCTTGCTCTCTGGCATGGTCCTCAAAATGTCAATAGTGCCCTGGGTAGCGGTGATGCATCTCATTCGGAGGAGA TCAAAATGAAATTTAATCCTGTGAACTTCCTTGATGCTGAAGGTAATACCGATGTTGGGTTTCTAGACCTTTTGTATGCCGGTCTTGACAGAAATGATTG GGGGGAAGCAGTAGAAAGTGATGAAAGCGAGATTGTGCGAGCTGCACTTGGTGAAGGATTGGCGAAGATTCTTCTCCTCAGTGACAATTATACAACTATA CCGTCTTCGTTACACCCTCTACTCTTTGCGAAGCTTATTGAACTATATTTTAGTGACGAAACTAATGACTTGCTGAGGCTAAAACAGTGTTTATCTGTTT TCTTTGAGCACTACCCTACCATTTCAGCTAATCATAAGGCAAGTAAATACTTATCAAAGGCGTTTATACCAGTTATGCACGCAATGTGGCCAGCCGTTTT TGGAAATTCTGGAGGAAGTACTGTTGTGGTATCTAACTTAAGAAAACGTGCAATCCAAGCATCACGGTTTATGCTACAGATGATGCAGGCTCCATTGTAT GTGTTAAACAATGAGACTGAGAACGCAGAGAGTGGTACTGGATCAGTAGAAAATGCAAATCACTCGCCAGAGCCTACACTAGAATGTAGAGAGGAAGGAC TCGCAGTACGCATAGCCACAGAGCTGGCCAGCTTCACAGGGAAGAGAACAGCTGCAGAGAGGTCATACATATCTGCTCTCTGCAGAATACTCGTCCTGAT CCAGTTTAGGATATCAGAGCAAGACACAATAAAGCTAATGAGACTACTTCTGAATCAACTGATTGGAAATGTACCTCTAGATAAAGATGTCTTGAAAGAA CTGAAGCTGATGGCTGAACGTCTAAGTTCAATGGATAGTCAACCAGAAGAGGAACTACACCAGGATCAGGCCAACCTTGTATTTGGCAATCTGGAGGTGG AATTCAACTTGGATGCCAACATTCCTGCTGCCAGTGCTGCTTCTAGCTCTACAAACCAGCAGACGCCAGCGCATACTCGAGCGAGCAGACCAAGCCGGCC GAGGAGGAGAGCAAAGGACGATGAAGAGACCTCGTCGGAGGAAGAAACTTCATCGGTACCAGTCCCGGTAGCAGCTGCAGGCAGTAGCAGGTCGCAAAGG GCGAGCAAGACTGCTGCATTGTCCAAGCTTCAGGGAGCAGCAGGTCGCAAGAAAGCTGCTGCGGCTAGGATTGAGGAGGAGGAAGAAGAAGATGATGAGT CAGATGTGTCGTCAGAAGATGCTGATGATGACAGTGAGGAGGACTTATTCTGA
AA sequence Show only first row Show all	>Lus10004038 pacid=23156709 polypeptide=Lus10004038 locus=Lus10004038.g ID=Lus10004038.BGIv1.0 annot-version=v1.0 MEANDEERMQLCRKIAKIFDETKTSNATHIRKLKDLSSVLSKSPSPRQFAAAFCRTLTPLFCIQRRTSSAERVVRFVSGFAGAQASGRDSGCDEFLEELL RFLLTASAAANKTVRFRACQMISEIIMRLPDDAEVSDDVWDEVIECMMLRVRDKASVIRTFAVRALSRFANDAENSDILNLLLEVLELEQSAEVRKTILL ALPPTNATSLVIVDCTLDVSESVRKAAYCVLANKFPLHSLSIKLRTLILQRGLADRSIIVSKECLKLLRDEWLSKCCYSDPIELLKYLDVETYELVGEAV MDALLKEGSIIIDNQSIQEYIVSTAGENEDSPPNIQLMEPESALYWKTVCRFLQSKAQAKGSDAAVTTGTEAAVYAAEASDSNDLLDRILPATVFDYVAL VKAHIDAGPNYRFASRQLLLLGAMVDFSDSTCRKVASAFLQNLLQRPLDFETDETGNEVVIGDGLSLGGEKDWADAVTSLAKQVHSGIGDIESAFLVVLE ELVRPCRERTADFKQWMHCLSVTGLLLQNTKSFHLLQGQAIQPSELLQSLLLPAAKHVHLDVQRVSIRCLGLFGLLEKKPSEDVVKQLRVSFIRGPSHIS AMACKALMDLALWHGPQNVNSALGSGDASHSEEIKMKFNPVNFLDAEGNTDVGFLDLLYAGLDRNDWGEAVESDESEIVRAALGEGLAKILLLSDNYTTI PSSLHPLLFAKLIELYFSDETNDLLRLKQCLSVFFEHYPTISANHKASKYLSKAFIPVMHAMWPAVFGNSGGSTVVVSNLRKRAIQASRFMLQMMQAPLY VLNNETENAESGTGSVENANHSPEPTLECREEGLAVRIATELASFTGKRTAAERSYISALCRILVLIQFRISEQDTIKLMRLLLNQLIGNVPLDKDVLKE LKLMAERLSSMDSQPEEELHQDQANLVFGNLEVEFNLDANIPAASAASSSTNQQTPAHTRASRPSRPRRRAKDDEETSSEEETSSVPVPVAAAGSSRSQR ASKTAALSKLQGAAGRKKAAAARIEEEEEEDDESDVSSEDADDDSEEDLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10004038 [exp]	0	1
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Lus10016397 [exp]	1.0	0.9826
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10020813 [exp]	2.0	0.9713
AT4G02110			transcription coactivators (.1...		Lus10001455 [exp]	4.0	0.9578
AT4G15890			binding (.1)		Lus10001471 [exp]	4.7	0.9627
AT1G26330			DNA binding (.1.2)		Lus10000645 [exp]	5.5	0.9661
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10028433 [exp]	5.7	0.9707
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10039167 [exp]	6.5	0.9649
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10031129 [exp]	6.6	0.9467
AT5G60930			P-loop containing nucleoside t...		Lus10000762 [exp]	7.5	0.9661
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10014315 [exp]	7.7	0.9659

Compare expression of checked genes

Lus10004038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.