Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48480 595 / 0 RKL1 receptor-like kinase 1 (.1) AT5G16590 589 / 0 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT3G02880 577 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 558 / 0 RLK902 receptor-like kinase 902 (.1) AT5G58300 442 / 1e-147 Leucine-rich repeat protein kinase family protein (.1.2) AT2G26730 368 / 8e-119 Leucine-rich repeat protein kinase family protein (.1) AT4G23740 354 / 1e-113 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 344 / 2e-109 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G08680 335 / 3e-106 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 333 / 1e-105 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031350 [exp] 705 / 0 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10010973 [exp] 680 / 0 AT1G48480 621 / 0.0 receptor-like kinase 1 (.1) Lus10002299 [exp] 644 / 0 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10017996 [exp] 627 / 0 AT1G48480 772 / 0.0 receptor-like kinase 1 (.1) Lus10031337 [exp] 569 / 0 AT1G48480 771 / 0.0 receptor-like kinase 1 (.1) Lus10017756 [exp] 496 / 1e-168 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031909 [exp] 426 / 2e-144 AT1G48480 441 / 2e-150 receptor-like kinase 1 (.1) Lus10033065 [exp] 401 / 3e-132 AT2G26730 768 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041992 [exp] 370 / 2e-125 AT3G17840 343 / 2e-115 receptor-like kinase 902 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G086100 [exp] 744 / 0 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.017G130600 [exp] 736 / 0 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.015G035500 [exp] 667 / 0 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.012G044600 [exp] 494 / 4e-168 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1) Potri.018G074300 [exp] 484 / 4e-164 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 379 / 2e-123 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 375 / 1e-121 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 367 / 6e-119 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G095200 [exp] 360 / 4e-116 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G062100 [exp] 359 / 4e-115 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004040 pacid=23156742 polypeptide=Lus10004040 locus=Lus10004040.g ID=Lus10004040.BGIv1.0 annot-version=v1.0 ATGAAGACTCTGCAGCTTTTCTTCTTCCTTTTGTCGGCGGCGGTGGTGTTGGTGGCGGTGGATTCAGATCTCGCATCCGACAGGGCGGCGCTGGTGAACC TCCGCAATACCGTTGGTGGTAGATCTCTGCTGTGGAACATGACAGACTCTCCTTGCAATTGGGTCGGCGTTATCTGCGACCGTAACCGGGTCGTAGAGCT CCATCTACCCGGAATGGGGCTATCAGGGGAGCTTCCTCTAGGATTGGGGAATCTGACCGAATTGCTCACGCTTTCCGTTAGGTTTAACGCTCTTAGAGGG AGTGTTCCAGCAGACATAGCGAATCTGAGTCTGCTCAGGAATCTGTATTTACAAGGGAATTTCTTCTCCGGCGAGATCCCGGCGTTTTTGTTTCCTTTGC AGAACTTGGTGAGGCTCAATTTGGCGGATAACAACTTCTCCGGGTCAATCTCTCCCGATTTCAACAAGTTGACCCGGTTGAGGACTCTGTATCTCGAAGG CAACCAGCTCACTGGACCAATCCCGGACATCAAAACGCCGCCGCTCGATCAGTTCAACGTCTCGTCCAACAATTTGACCGGACCAATCCCCGCCGCTCTC GCCGCAAAGCCCGCCACTGCTTTCTTGGATAACTCCCAGCTCTGCGGGAAGCCACTGGTCAGCTGTGACGGCACAGACGCCGCCACCGGCGGCGGAAGAA AAAAACTATCCGGCGGCGCACTCGCCGGAATCATCATCGGGTGCGTAATCGGATTCTTATTGCTGTTATTGATCCTATTCTGCCTCTGTCGGAAGCGGAA AACCACCAGAGAGGTCTCCAACAAGGATGTCGAGCAGATCCGCGAGACTGAAAACTCCTCCGCCGAGAATGGGAAGGCGAATTCAGCCGCCGCCGTGCCC GCCGTTGCTGCACCGGCTGCGGCTGCGCCGGCGACGAAGGCGGATGCGAAGGGGATGGCGAGCAAGAGTCTGGTGTTCTTCGGGAACACGCCGAGGACGT TCGATCTGGAGGATTTGCTAAGGGCGTCTGCTGAAGTGCTGGGGAAAGGAACATTCGGGACGACGTACAAGGCTACGCTGGAGATGGGAGTGGTGATGGC GGTGAAGAGGTTGAAGGAGGTGATCGTGAGTGAGAAGGAGTACAGGGAGAAGATTGAGGTGGTTGGGAAGATGAACGATGAGAATCTGGTGATGTTGAAG GCTTACTATTTCAGTAAAGATGAAAAGCTTCTTGTGTATGAGTACATGTCCATGGGAAGCTTATCTGCACTTTTACACGGAAACAGAGGAGCTGGAAGGA CGCCATTGAACTGGGACACAAGGTCAACCATTGCACTAGGAGCAGCCAAAGGAATATCATATCTCCATTCTCAAGGCTCATCAATCTCTCACGGCAACAT CAAGTCATCAAACATCCTCCTCACCAAATCCTACGAAGCCCGCGTCTCCGATTTCGGCCTAGCGCAGCTAGCCGGAGCTGCGCCTAACACTAGCAGAGTG GACGGGTACCGTGCGCCTGAAGTAACCGATGCTCACAAGGTGTCCCAAAAGGCAGACGTCTACAGCTTCGGTGTTCTCATCCTTGAACTCCTCACCGGTA AGGCTCCCACCCATTCGTTGACCAACGATGAAGGGGTTGACCTTCCGCGATGGGTTCAATCAGTAGTGAGGGAGGAGTGGACCGCTGAGGTGTTCGATCT CGAGCTGCTTAGGTACCAGAATGTTGAGGAAGAGATGGTTGAGCTTTTGCAGCTTGCCATTGACTGCACTGCTCAGTATCCGGATAAACGTCCTTCCATG GCTGAGGTGGCTCGTAGGATCGAAGAGATATGTCGATCTACTACTTCCGAAAATGGCGGCATTGTTGCGGATGAATCGTCAGTTGAATCAGGAGTGCCAG CAGCATAA
AA sequence Show only first row Show all	>Lus10004040 pacid=23156742 polypeptide=Lus10004040 locus=Lus10004040.g ID=Lus10004040.BGIv1.0 annot-version=v1.0 MKTLQLFFFLLSAAVVLVAVDSDLASDRAALVNLRNTVGGRSLLWNMTDSPCNWVGVICDRNRVVELHLPGMGLSGELPLGLGNLTELLTLSVRFNALRG SVPADIANLSLLRNLYLQGNFFSGEIPAFLFPLQNLVRLNLADNNFSGSISPDFNKLTRLRTLYLEGNQLTGPIPDIKTPPLDQFNVSSNNLTGPIPAAL AAKPATAFLDNSQLCGKPLVSCDGTDAATGGGRKKLSGGALAGIIIGCVIGFLLLLLILFCLCRKRKTTREVSNKDVEQIRETENSSAENGKANSAAAVP AVAAPAAAAPATKADAKGMASKSLVFFGNTPRTFDLEDLLRASAEVLGKGTFGTTYKATLEMGVVMAVKRLKEVIVSEKEYREKIEVVGKMNDENLVMLK AYYFSKDEKLLVYEYMSMGSLSALLHGNRGAGRTPLNWDTRSTIALGAAKGISYLHSQGSSISHGNIKSSNILLTKSYEARVSDFGLAQLAGAAPNTSRV DGYRAPEVTDAHKVSQKADVYSFGVLILELLTGKAPTHSLTNDEGVDLPRWVQSVVREEWTAEVFDLELLRYQNVEEEMVELLQLAIDCTAQYPDKRPSM AEVARRIEEICRSTTSENGGIVADESSVESGVPAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10004040 [exp]	0	1
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10009248 [exp]	1.0	0.9456
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10018338 [exp]	3.5	0.9263
AT3G16200			unknown protein		Lus10006829 [exp]	4.9	0.9263
AT3G16200			unknown protein		Lus10037579 [exp]	6.0	0.9054
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10035422 [exp]	6.3	0.9051
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10022559 [exp]	7.7	0.9245
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10031032 [exp]	8.8	0.9051
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10042497 [exp]	9.2	0.9154
AT5G10840			Endomembrane protein 70 protei...		Lus10042415 [exp]	9.2	0.9155
AT5G12250		TUB6	beta-6 tubulin (.1)		Lus10026813 [exp]	9.6	0.8859

Compare expression of checked genes

Lus10004040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.